Resource

Id ATAC-seq/ENCSR637MUFcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR637MUF [biosample_summary="Homo sapiens GM19035"]
Description
Labels
  • accession: ENCSR637MUF
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0025816/
  • biosample_summary: Homo sapiens GM19035
  • date_created: 2020-11-24T22:02:37.472434+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR637MUF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR637MUF float

ATAC-seq_ENCSR637MUF
ATAC-seq ENCSR637MUF [biosample_summary="Homo sapiens GM19035"]
 HISTOGRAM FOR ATAC-seq_ENCSR637MUF [1.55, 32.3]
n
52,556,886
mean
6.79
sd
3.14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 525568861.63% 93995
chr1 4738403 1.90% 8336
chr2 4600588 1.90% 8419
chr3 3730678 1.88% 6901
chr4 3099259 1.63% 5949
chr5 3255764 1.79% 6022
chr6 3548592 2.08% 6419
chr7 2983962 1.87% 5438
chr8 2662172 1.83% 4969
chr9 2077166 1.50% 3722
chr10 2467755 1.84% 4454
chr11 2635949 1.95% 4687
chr12 2640260 1.98% 4714
chr13 1430514 1.25% 2653
chr14 1532794 1.43% 2674
chr15 1439717 1.41% 2498
chr16 1412216 1.56% 2282
chr17 1781746 2.14% 2848
chr18 1163773 1.45% 2173
chr19 1451891 2.48% 2116
chr20 1077315 1.67% 1881
chr21 491649 1.05% 801
chr22 663196 1.31% 1016
chrX 1541340 0.99% 2756
chrY 130187 0.23% 267
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 93995 150 2968 559.15 453
global segment-length histogram

Files

Filename Size md5
ENCFF840HAH.bed.gz 3.81 MB 2a0a0d0cecad3d3c90d3b53347b0a102
ENCFF840HAH.tabix.bed.gz 1.03 MB b75fd852b8f5a100811cf98d0b6f236f
ENCFF840HAH.tabix.bed.gz.tbi 437.21 KB 1461ea7a41adb8d950616304b6d77ca9
genomic_resource.yaml 1.28 KB 6df3385f658a5ed08e6e255be42cb009
statistics/