Resource
| Id | ATAC-seq/ENCSR635CAC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR635CAC [biosample_summary="Homo sapiens GM19467"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN785VFD|/analyses/ENCAN785VFD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF152BRZ|/files/ENCFF152BRZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.83779. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF152BRZ|/files/ENCFF152BRZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR635CAC | float |
ATAC-seq_ENCSR635CAC |
ATAC-seq ENCSR635CAC [biosample_summary="Homo sapiens GM19467"]
|
 |
[1.55, 39.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 47029763 | 1.46% | 89352 |
| chr1 | 4215855 | 1.69% | 7899 |
| chr2 | 4014959 | 1.66% | 7852 |
| chr3 | 3276092 | 1.65% | 6341 |
| chr4 | 2664015 | 1.40% | 5347 |
| chr5 | 2792749 | 1.54% | 5484 |
| chr6 | 3149647 | 1.84% | 6022 |
| chr7 | 2591447 | 1.63% | 4965 |
| chr8 | 2326046 | 1.60% | 4569 |
| chr9 | 1879628 | 1.36% | 3568 |
| chr10 | 2253573 | 1.68% | 4301 |
| chr11 | 2276888 | 1.69% | 4321 |
| chr12 | 2336968 | 1.75% | 4418 |
| chr13 | 1287422 | 1.13% | 2511 |
| chr14 | 1443961 | 1.35% | 2677 |
| chr15 | 1341831 | 1.32% | 2516 |
| chr16 | 1354935 | 1.50% | 2385 |
| chr17 | 1643762 | 1.97% | 2874 |
| chr18 | 1080526 | 1.34% | 2163 |
| chr19 | 1357891 | 2.32% | 2155 |
| chr20 | 1023644 | 1.59% | 1911 |
| chr21 | 465730 | 1.00% | 836 |
| chr22 | 606941 | 1.19% | 1026 |
| chrX | 1643939 | 1.05% | 3206 |
| chrY | 1314 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 89352 | 150 | 2615 | 526.34 | 439 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF837IEL.bed.gz | 3.39 MB | 58bb4d758149716ef65b1193f693663f |
| ENCFF837IEL.tabix.bed.gz | 1005.85 KB | 1c3c2c12d3eff8c9d2f457a13d277e41 |
| ENCFF837IEL.tabix.bed.gz.tbi | 418.18 KB | 92bb4e8ec5528b515c03102b5377f5d6 |
| genomic_resource.yaml | 2.48 KB | 4c281fefffe5426a77ee4e9f61af2ebf |
| statistics/ |