Resource
| Id | ATAC-seq/ENCSR630REB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR630REB [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN196VYA|/analyses/ENCAN196VYA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN196VYA|/analyses/ENCAN196VYA/} has in progress subobject document {5f48a3b9-dee5-469f-b5e8-8d8a27326b52|/documents/5f48a3b9-dee5-469f-b5e8-8d8a27326b52/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF135ENI|/files/ENCFF135ENI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.86587. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF135ENI|/files/ENCFF135ENI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR630REB | float |
ATAC-seq_ENCSR630REB |
ATAC-seq ENCSR630REB [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)"]
|
 |
[1.31, 35.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 56595331 | 1.76% | 96242 |
| chr1 | 5385231 | 2.16% | 8911 |
| chr2 | 4506720 | 1.86% | 7840 |
| chr3 | 3658376 | 1.84% | 6456 |
| chr4 | 2567287 | 1.35% | 4620 |
| chr5 | 3028566 | 1.67% | 5414 |
| chr6 | 3255561 | 1.91% | 5643 |
| chr7 | 2772314 | 1.74% | 4786 |
| chr8 | 2454831 | 1.69% | 4371 |
| chr9 | 2568614 | 1.86% | 4335 |
| chr10 | 2922327 | 2.18% | 5085 |
| chr11 | 2939921 | 2.18% | 4835 |
| chr12 | 2774499 | 2.08% | 4697 |
| chr13 | 1339180 | 1.17% | 2398 |
| chr14 | 1791494 | 1.67% | 3036 |
| chr15 | 2031861 | 1.99% | 3400 |
| chr16 | 2006785 | 2.22% | 3187 |
| chr17 | 2608724 | 3.13% | 4101 |
| chr18 | 1095391 | 1.36% | 1949 |
| chr19 | 2036209 | 3.47% | 3010 |
| chr20 | 1476019 | 2.29% | 2532 |
| chr21 | 768847 | 1.65% | 1295 |
| chr22 | 1174199 | 2.31% | 1903 |
| chrX | 1355747 | 0.87% | 2295 |
| chrY | 76628 | 0.13% | 143 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 96242 | 150 | 3104 | 588.05 | 473 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF664YGN.bed.gz | 4.14 MB | 607bea3281b8a3466e7e6ffafd69381e |
| ENCFF664YGN.tabix.bed.gz | 1.06 MB | 0a7a9f7d7eea86206bf1c3d1f126ec0b |
| ENCFF664YGN.tabix.bed.gz.tbi | 403.52 KB | 682969d303d34d4a92e868064ed7e89c |
| genomic_resource.yaml | 2.78 KB | 0beb308cbb67f1e2a822ca506ab4535b |
| statistics/ |