Resource
| Id | ATAC-seq/ENCSR621JYI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR621JYI [biosample_summary="Homo sapiens HG02885"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN910RHO|/analyses/ENCAN910RHO/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF056MAS|/files/ENCFF056MAS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.579095. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF056MAS|/files/ENCFF056MAS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR621JYI | float |
ATAC-seq_ENCSR621JYI |
ATAC-seq ENCSR621JYI [biosample_summary="Homo sapiens HG02885"]
|
 |
[1.36, 45.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 64432781 | 2.00% | 122587 |
| chr1 | 5419641 | 2.18% | 10138 |
| chr2 | 5856651 | 2.42% | 11355 |
| chr3 | 4728006 | 2.38% | 9258 |
| chr4 | 4163992 | 2.19% | 8264 |
| chr5 | 4179066 | 2.30% | 8124 |
| chr6 | 4441839 | 2.60% | 8504 |
| chr7 | 3802622 | 2.39% | 7371 |
| chr8 | 3404932 | 2.35% | 6646 |
| chr9 | 2484673 | 1.80% | 4732 |
| chr10 | 3044336 | 2.28% | 5828 |
| chr11 | 3029827 | 2.24% | 5642 |
| chr12 | 3172609 | 2.38% | 5953 |
| chr13 | 1910575 | 1.67% | 3757 |
| chr14 | 1857188 | 1.73% | 3436 |
| chr15 | 1581805 | 1.55% | 2960 |
| chr16 | 1571956 | 1.74% | 2795 |
| chr17 | 1822543 | 2.19% | 3151 |
| chr18 | 1584699 | 1.97% | 3134 |
| chr19 | 1476459 | 2.52% | 2370 |
| chr20 | 1269230 | 1.97% | 2398 |
| chr21 | 633579 | 1.36% | 1143 |
| chr22 | 684098 | 1.35% | 1160 |
| chrX | 2311567 | 1.48% | 4465 |
| chrY | 888 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 122587 | 150 | 3139 | 525.61 | 431 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF061BAD.bed.gz | 4.64 MB | 9b4492e441b5970c9a2277770c1cc535 |
| ENCFF061BAD.tabix.bed.gz | 1.33 MB | b7aa9885dfae69ad8126d2f33e960716 |
| ENCFF061BAD.tabix.bed.gz.tbi | 504.3 KB | 27bd968442bdfe4d1aeb29d41b483ec4 |
| genomic_resource.yaml | 2.49 KB | fbc5129bbbc35eb0d1e99af75d26293d |
| statistics/ |