Resource

Id ATAC-seq/ENCSR608KJDcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR608KJD [biosample_summary="Homo sapiens HG03097"]
Description
Labels
  • accession: ENCSR608KJD
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0010867/
  • biosample_summary: Homo sapiens HG03097
  • date_created: 2020-11-24T22:02:42.121517+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR608KJD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR608KJD float

ATAC-seq_ENCSR608KJD
ATAC-seq ENCSR608KJD [biosample_summary="Homo sapiens HG03097"]
 HISTOGRAM FOR ATAC-seq_ENCSR608KJD [1.5, 33.3]
n
44,391,419
mean
5.73
sd
2.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 443914191.38% 85891
chr1 3968126 1.59% 7505
chr2 3704370 1.53% 7462
chr3 2943270 1.48% 5877
chr4 2470419 1.30% 5141
chr5 2572533 1.42% 5159
chr6 2963936 1.74% 5824
chr7 2377480 1.49% 4717
chr8 2130954 1.47% 4302
chr9 1778930 1.29% 3464
chr10 2113551 1.58% 4144
chr11 2115779 1.57% 4063
chr12 2212379 1.66% 4226
chr13 1188165 1.04% 2406
chr14 1390698 1.30% 2624
chr15 1310248 1.28% 2458
chr16 1375348 1.52% 2379
chr17 1703917 2.05% 2938
chr18 996762 1.24% 2057
chr19 1464677 2.50% 2305
chr20 994187 1.54% 1885
chr21 455563 0.98% 819
chr22 667638 1.31% 1142
chrX 1490324 0.96% 2985
chrY 2165 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 85891 150 2637 516.83 420
global segment-length histogram

Files

Filename Size md5
ENCFF720PYC.bed.gz 3.17 MB 748b8d5a4ea1bc0293d166ca26d26b3a
ENCFF720PYC.tabix.bed.gz 959.85 KB 36130a0db1e6467c9483f67100d97b47
ENCFF720PYC.tabix.bed.gz.tbi 403.03 KB a29b492265177f8161b523831a7c38d6
genomic_resource.yaml 1.71 KB 1b06e200b5de6b58a00c33587c84ba15
statistics/