Resource
| Id | ATAC-seq/ENCSR604YEQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR604YEQ [biosample_summary="Homo sapiens HG02884"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN171XIN|/analyses/ENCAN171XIN/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF079OKV|/files/ENCFF079OKV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.81723. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF079OKV|/files/ENCFF079OKV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR604YEQ | float |
ATAC-seq_ENCSR604YEQ |
ATAC-seq ENCSR604YEQ [biosample_summary="Homo sapiens HG02884"]
|
 |
[1.51, 42.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53443105 | 1.66% | 105719 |
| chr1 | 4586794 | 1.84% | 8881 |
| chr2 | 4786299 | 1.98% | 9660 |
| chr3 | 3976331 | 2.01% | 8084 |
| chr4 | 3352486 | 1.76% | 6875 |
| chr5 | 3456374 | 1.90% | 7018 |
| chr6 | 3659758 | 2.14% | 7220 |
| chr7 | 3091520 | 1.94% | 6155 |
| chr8 | 2818906 | 1.94% | 5683 |
| chr9 | 2111346 | 1.53% | 4143 |
| chr10 | 2606449 | 1.95% | 5170 |
| chr11 | 2556094 | 1.89% | 5022 |
| chr12 | 2636340 | 1.98% | 5185 |
| chr13 | 1574845 | 1.38% | 3189 |
| chr14 | 1566616 | 1.46% | 3050 |
| chr15 | 1379985 | 1.35% | 2718 |
| chr16 | 1355039 | 1.50% | 2507 |
| chr17 | 1459693 | 1.75% | 2747 |
| chr18 | 1330729 | 1.66% | 2703 |
| chr19 | 1140586 | 1.95% | 1906 |
| chr20 | 1078175 | 1.67% | 2134 |
| chr21 | 525569 | 1.13% | 986 |
| chr22 | 493471 | 0.97% | 906 |
| chrX | 1754253 | 1.12% | 3463 |
| chrY | 145447 | 0.25% | 314 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 105719 | 150 | 2845 | 505.52 | 421 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF354WTG.bed.gz | 3.84 MB | 11ecd3a28fd6a71193c2b81fb6708c26 |
| ENCFF354WTG.tabix.bed.gz | 1.14 MB | 69c1ebb3ed2a96affa1052e5bd778a9f |
| ENCFF354WTG.tabix.bed.gz.tbi | 461.36 KB | 25a66852c0cc7ba9beffadda1e2503ac |
| genomic_resource.yaml | 2.48 KB | 0a26c37d0c66a50cc8f651fe76a48db3 |
| statistics/ |