Resource
| Id | ATAC-seq/ENCSR600ZHS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR600ZHS [biosample_summary="Homo sapiens left colon tissue female adult (46 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (46 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN536LLP|/analyses/ENCAN536LLP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN536LLP|/analyses/ENCAN536LLP/} has in progress subobject document {37cb3687-aebf-4f29-a324-db16a89e95cf|/documents/37cb3687-aebf-4f29-a324-db16a89e95cf/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF975WNG|/files/ENCFF975WNG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.871893. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF975WNG|/files/ENCFF975WNG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR600ZHS | float |
ATAC-seq_ENCSR600ZHS |
ATAC-seq ENCSR600ZHS [biosample_summary="Homo sapiens left colon tissue female adult (46 years)"]
|
 |
[1.19, 41.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 85154794 | 2.65% | 168109 |
| chr1 | 8313319 | 3.34% | 16146 |
| chr2 | 6710047 | 2.77% | 13686 |
| chr3 | 5177510 | 2.61% | 10542 |
| chr4 | 4010469 | 2.11% | 8371 |
| chr5 | 4195979 | 2.31% | 8615 |
| chr6 | 4809519 | 2.82% | 9682 |
| chr7 | 4373438 | 2.74% | 8778 |
| chr8 | 3445838 | 2.37% | 7054 |
| chr9 | 3807026 | 2.75% | 7499 |
| chr10 | 4039069 | 3.02% | 8147 |
| chr11 | 4348345 | 3.22% | 8435 |
| chr12 | 4055051 | 3.04% | 8032 |
| chr13 | 2003154 | 1.75% | 4115 |
| chr14 | 2824064 | 2.64% | 5556 |
| chr15 | 2995834 | 2.94% | 5849 |
| chr16 | 3142551 | 3.48% | 5762 |
| chr17 | 4283208 | 5.14% | 7794 |
| chr18 | 1758682 | 2.19% | 3676 |
| chr19 | 3196309 | 5.45% | 5423 |
| chr20 | 2307790 | 3.58% | 4562 |
| chr21 | 1139313 | 2.44% | 2145 |
| chr22 | 1877326 | 3.69% | 3459 |
| chrX | 2338523 | 1.50% | 4770 |
| chrY | 2430 | <0.01% | 11 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 168109 | 150 | 4357 | 506.55 | 388 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF009YES.bed.gz | 6.44 MB | a942f6058a93e72297a41c7b108c6211 |
| ENCFF009YES.tabix.bed.gz | 1.84 MB | b21a5df78202c31136b8361ed482a205 |
| ENCFF009YES.tabix.bed.gz.tbi | 494.31 KB | c0e5562ddd558b611ff03a6bcaab9e9b |
| genomic_resource.yaml | 2.78 KB | 85ec8dbf0f60180629d5a43bd7565898 |
| statistics/ |