Resource
| Id | ATAC-seq/ENCSR584AXZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR584AXZ [biosample_summary="Homo sapiens coronary artery tissue female adult (51 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN960SLX|/analyses/ENCAN960SLX/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN960SLX|/analyses/ENCAN960SLX/} has in progress subobject document {d3be7c62-5279-4d3e-b698-86c1ca80c17d|/documents/d3be7c62-5279-4d3e-b698-86c1ca80c17d/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF442OCV|/files/ENCFF442OCV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.07. audit_not_compliant: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF442OCV|/files/ENCFF442OCV/} (overlap peaks) and {ENCFF231FCU|/files/ENCFF231FCU/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 82924 and 36671 peaks. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR584AXZ | float |
ATAC-seq_ENCSR584AXZ |
ATAC-seq ENCSR584AXZ [biosample_summary="Homo sapiens coronary artery tissue female adult (51 years)"]
|
 |
[1.57, 19.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 25994845 | 0.81% | 56982 |
| chr1 | 2472066 | 0.99% | 5219 |
| chr2 | 2019722 | 0.83% | 4530 |
| chr3 | 1612757 | 0.81% | 3628 |
| chr4 | 1187167 | 0.62% | 2701 |
| chr5 | 1349905 | 0.74% | 3078 |
| chr6 | 1464727 | 0.86% | 3260 |
| chr7 | 1367845 | 0.86% | 3021 |
| chr8 | 1119810 | 0.77% | 2537 |
| chr9 | 1134686 | 0.82% | 2462 |
| chr10 | 1255407 | 0.94% | 2765 |
| chr11 | 1362690 | 1.01% | 2921 |
| chr12 | 1233280 | 0.93% | 2669 |
| chr13 | 652147 | 0.57% | 1492 |
| chr14 | 784272 | 0.73% | 1686 |
| chr15 | 853219 | 0.84% | 1841 |
| chr16 | 948267 | 1.05% | 1988 |
| chr17 | 1192332 | 1.43% | 2464 |
| chr18 | 566975 | 0.71% | 1350 |
| chr19 | 1118901 | 1.91% | 2247 |
| chr20 | 673285 | 1.04% | 1504 |
| chr21 | 313549 | 0.67% | 701 |
| chr22 | 531878 | 1.05% | 1114 |
| chrX | 778237 | 0.50% | 1797 |
| chrY | 1721 | <0.01% | 7 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 56982 | 150 | 2559 | 456.19 | 364 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF442OCV.bed.gz | 1.94 MB | 813f09d6a7d464b282ce3e98245b9b6a |
| ENCFF442OCV.tabix.bed.gz | 631.36 KB | c390bcdb9f8a7b421dbcd46887b3ed2f |
| ENCFF442OCV.tabix.bed.gz.tbi | 330.96 KB | cb9ff3aa86f596017109f75d74ed09bf |
| genomic_resource.yaml | 2.6 KB | 73b2b28bae037fe31d79782240c34c2c |
| statistics/ |