Resource

Id ATAC-seq/ENCSR571JFOcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR571JFO [biosample_summary="Homo sapiens ovary tissue female child (16 years)"]
Description
Labels
  • accession: ENCSR571JFO
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female child (16 years)
  • date_created: 2019-07-30T08:22:59.171182+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR571JFO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR571JFO float

ATAC-seq_ENCSR571JFO
ATAC-seq ENCSR571JFO [biosample_summary="Homo sapiens ovary tissue female child (16 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR571JFO [1.33, 27.1]
n
75,701,509
mean
4.19
sd
2.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 757015092.35% 124900
chr1 6997592 2.81% 11364
chr2 5941389 2.45% 10088
chr3 4470575 2.25% 7623
chr4 3164350 1.66% 5478
chr5 3737199 2.06% 6401
chr6 4125316 2.42% 7009
chr7 3951183 2.48% 6627
chr8 3219384 2.22% 5469
chr9 3405763 2.46% 5512
chr10 3786314 2.83% 6386
chr11 3915818 2.90% 6282
chr12 3523945 2.64% 5783
chr13 1791450 1.57% 3115
chr14 2388773 2.23% 3924
chr15 2570784 2.52% 4292
chr16 2873003 3.18% 4535
chr17 3746417 4.50% 5786
chr18 1650048 2.05% 2915
chr19 3281936 5.60% 4722
chr20 2177783 3.38% 3646
chr21 1091490 2.34% 1785
chr22 1863868 3.67% 2946
chrX 2025548 1.30% 3206
chrY 1581 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 124900 150 3956 606.1 482
global segment-length histogram

Files

Filename Size md5
ENCFF882LKE.bed.gz 4.91 MB d9979cebbbdde32e057cfc92efd0c860
ENCFF882LKE.tabix.bed.gz 1.36 MB 20f487781a11808a2195867140b19a94
ENCFF882LKE.tabix.bed.gz.tbi 476.14 KB de20348448eecd142153d1537c487724
genomic_resource.yaml 2.16 KB bdb35488f8a9ea87640c584cbbaa2587
statistics/