Resource

Id ATAC-seq/ENCSR566LZTcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR566LZT [biosample_summary="Homo sapiens dendritic cell treated with lipopolysaccharide"]
Description
Labels
  • accession: ENCSR566LZT
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with lipopolysaccharide
  • date_created: 2016-10-11T22:36:11.184569+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR566LZT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with lipopolysaccharide
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR566LZT float

ATAC-seq_ENCSR566LZT
ATAC-seq ENCSR566LZT [biosample_summary="Homo sapiens dendritic cell treated with lipopolysaccharide"]
 HISTOGRAM FOR ATAC-seq_ENCSR566LZT [1.79, 30.4]
n
33,544,910
mean
6.87
sd
3.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 335449101.04% 83338
chr1 3057675 1.23% 7547
chr2 2814552 1.16% 7098
chr3 2275372 1.15% 5731
chr4 1610259 0.85% 4063
chr5 1858462 1.02% 4712
chr6 2056087 1.20% 5198
chr7 1814651 1.14% 4499
chr8 1644125 1.13% 4147
chr9 1384880 1.00% 3465
chr10 1644664 1.23% 4127
chr11 1654052 1.22% 4137
chr12 1649168 1.24% 4120
chr13 814488 0.71% 2062
chr14 1040677 0.97% 2545
chr15 1048873 1.03% 2618
chr16 1124512 1.24% 2663
chr17 1356172 1.63% 3247
chr18 767804 0.96% 1958
chr19 1193140 2.04% 2616
chr20 870130 1.35% 2206
chr21 404713 0.87% 974
chr22 518565 1.02% 1229
chrX 940768 0.60% 2371
chrY 1121 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 83338 150 2193 402.52 339
global segment-length histogram

Files

Filename Size md5
ENCFF187HFU.bed.gz 2.59 MB 578f2e6f400987536ea60732895d5ed0
ENCFF187HFU.tabix.bed.gz 919.89 KB 54467a5239d51f4c191ea15b4fd14374
ENCFF187HFU.tabix.bed.gz.tbi 380.27 KB fcc188e4c7190da083074d05ae7d740c
genomic_resource.yaml 1.46 KB a526acbb9b5e182e38683e9bb5c0116e
statistics/