Resource

Id ATAC-seq/ENCSR555ZDHcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR555ZDH [biosample_summary="Homo sapiens lower lobe of left lung tissue male adult (60 years)"]
Description
Labels
  • accession: ENCSR555ZDH
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008953/
  • biosample_summary: Homo sapiens lower lobe of left lung tissue male adult (60 years)
  • date_created: 2019-06-02T09:49:47.507177+00:00
  • date_released: 2020-08-05
  • doi: 10.17989/ENCSR555ZDH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (60 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR555ZDH float

ATAC-seq_ENCSR555ZDH
ATAC-seq ENCSR555ZDH [biosample_summary="Homo sapiens lower lobe of left lung tissue male adult (60 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR555ZDH [1.35, 39.5]
n
109,040,305
mean
6.4
sd
3.42

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1090403053.39% 185953
chr1 10493591 4.22% 17687
chr2 8933993 3.69% 15460
chr3 7218794 3.64% 12784
chr4 4936537 2.60% 8872
chr5 5718917 3.15% 10014
chr6 6356590 3.72% 11104
chr7 5599268 3.51% 9548
chr8 4829257 3.33% 8486
chr9 4715176 3.41% 7983
chr10 5532513 4.13% 9516
chr11 5458888 4.04% 9077
chr12 5247462 3.94% 8984
chr13 2776245 2.43% 4902
chr14 3511674 3.28% 5940
chr15 3691862 3.62% 6227
chr16 3794542 4.20% 6120
chr17 4993965 6.00% 7909
chr18 2387898 2.97% 4106
chr19 3577092 6.10% 5418
chr20 2879897 4.47% 4886
chr21 1451146 3.11% 2379
chr22 2217366 4.36% 3465
chrX 2553528 1.64% 4740
chrY 164104 0.29% 346
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 185953 150 3978 586.39 490
global segment-length histogram

Files

Filename Size md5
ENCFF479HQR.bed.gz 6.82 MB 759ab291f850db9cab19af13854e7c7b
ENCFF479HQR.tabix.bed.gz 2.03 MB 76c259393f6a0263e4915c72180de63c
ENCFF479HQR.tabix.bed.gz.tbi 559.59 KB 22a836e505ccd179bd461c19ae6465bd
genomic_resource.yaml 1.66 KB 12dd68eabfa2b846ba5ed2970a76b5b1
statistics/