Resource
| Id | ATAC-seq/ENCSR551CSY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR551CSY [biosample_summary="Homo sapiens mesenteric fat pad tissue male adult (26 years)"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (26 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN223IMF|/analyses/ENCAN223IMF/} has in progress subobject document {73c67af5-439f-49af-b75e-2e47d63e7c88|/documents/73c67af5-439f-49af-b75e-2e47d63e7c88/} audit_internal_action: Released analysis {ENCAN223IMF|/analyses/ENCAN223IMF/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF755SIZ|/files/ENCFF755SIZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.836721. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF755SIZ|/files/ENCFF755SIZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR551CSY | float |
ATAC-seq_ENCSR551CSY |
ATAC-seq ENCSR551CSY [biosample_summary="Homo sapiens mesenteric fat pad tissue male adult (26 years)"]
|
 |
[1.33, 37.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 82836542 | 2.57% | 146717 |
| chr1 | 7736502 | 3.11% | 13488 |
| chr2 | 7410774 | 3.06% | 13472 |
| chr3 | 5246790 | 2.65% | 9554 |
| chr4 | 3366997 | 1.77% | 6266 |
| chr5 | 4344256 | 2.39% | 7910 |
| chr6 | 4768090 | 2.79% | 8531 |
| chr7 | 4387470 | 2.75% | 7923 |
| chr8 | 3630066 | 2.50% | 6614 |
| chr9 | 3388437 | 2.45% | 5992 |
| chr10 | 4330673 | 3.24% | 7810 |
| chr11 | 4275651 | 3.17% | 7485 |
| chr12 | 3926260 | 2.95% | 7008 |
| chr13 | 2029001 | 1.77% | 3717 |
| chr14 | 2683664 | 2.51% | 4725 |
| chr15 | 2826236 | 2.77% | 4916 |
| chr16 | 2818226 | 3.12% | 4700 |
| chr17 | 3845955 | 4.62% | 6311 |
| chr18 | 1770510 | 2.20% | 3284 |
| chr19 | 3031403 | 5.17% | 4673 |
| chr20 | 2301548 | 3.57% | 4064 |
| chr21 | 1155719 | 2.47% | 2002 |
| chr22 | 1754418 | 3.45% | 2920 |
| chrX | 1720480 | 1.10% | 3163 |
| chrY | 87416 | 0.15% | 189 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 146717 | 150 | 3328 | 564.6 | 454 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF168WTX.bed.gz | 5.49 MB | 6a1161064f1b540f95a930083a7fdef7 |
| ENCFF168WTX.tabix.bed.gz | 1.6 MB | 7d766b724e6fe1ff0e42e12a854b50b0 |
| ENCFF168WTX.tabix.bed.gz.tbi | 503.98 KB | 7b6909c48e0bd91becaa40f627f703de |
| genomic_resource.yaml | 2.8 KB | 68f5c36c015318ca13aa36c4d1592c1b |
| statistics/ |