Resource

Id ATAC-seq/ENCSR548QCPcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR548QCP [biosample_summary="Homo sapiens sigmoid colon tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR548QCP
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001159/
  • biosample_summary: Homo sapiens sigmoid colon tissue male adult (37 years)
  • date_created: 2016-04-26T18:36:40.252064+00:00
  • date_released: 2016-06-15
  • doi: 10.17989/ENCSR548QCP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR548QCP float

ATAC-seq_ENCSR548QCP
ATAC-seq ENCSR548QCP [biosample_summary="Homo sapiens sigmoid colon tissue male adult (37 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR548QCP [1.34, 33.1]
n
35,115,486
mean
4.96
sd
2.26

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 351154861.09% 58878
chr1 3463968 1.39% 5642
chr2 2710863 1.12% 4629
chr3 2120923 1.07% 3647
chr4 1513195 0.80% 2700
chr5 1733721 0.96% 3017
chr6 1924337 1.13% 3271
chr7 1798334 1.13% 3055
chr8 1420261 0.98% 2495
chr9 1609602 1.16% 2711
chr10 1737094 1.30% 2967
chr11 1888206 1.40% 3081
chr12 1720595 1.29% 2850
chr13 789814 0.69% 1429
chr14 1153678 1.08% 1914
chr15 1183858 1.16% 1951
chr16 1328517 1.47% 2159
chr17 1807675 2.17% 2845
chr18 688379 0.86% 1237
chr19 1572875 2.68% 2399
chr20 955913 1.48% 1612
chr21 455036 0.97% 784
chr22 804341 1.58% 1334
chrX 700657 0.45% 1074
chrY 33644 0.06% 75
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 58878 150 2785 596.41 491
global segment-length histogram

Files

Filename Size md5
ENCFF832KPZ.bed.gz 2.55 MB 77abc38d4f688251520be655c9c28dbb
ENCFF832KPZ.tabix.bed.gz 671.62 KB 4faa1beb218c3f0e97e722b349733636
ENCFF832KPZ.tabix.bed.gz.tbi 323.0 KB da79bdb39f83b4e85a3102f11291af08
genomic_resource.yaml 1.62 KB 4558ca51bb77fe79609ccba2a21f6f43
statistics/