Resource
| Id | ATAC-seq/ENCSR545UJP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR545UJP [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta T cell nuclear fraction male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN368HDK|/analyses/ENCAN368HDK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF112PVN|/files/ENCFF112PVN/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.895784. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR545UJP | float |
ATAC-seq_ENCSR545UJP |
ATAC-seq ENCSR545UJP [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta T cell nuclear fraction male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days"]
|
 |
[1.29, 39.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45673824 | 1.42% | 69310 |
| chr1 | 4631020 | 1.86% | 6960 |
| chr2 | 3528156 | 1.46% | 5464 |
| chr3 | 2688742 | 1.36% | 4187 |
| chr4 | 1712138 | 0.90% | 2597 |
| chr5 | 2130043 | 1.17% | 3282 |
| chr6 | 2737256 | 1.60% | 4131 |
| chr7 | 2263573 | 1.42% | 3479 |
| chr8 | 1753288 | 1.21% | 2736 |
| chr9 | 1862354 | 1.35% | 2860 |
| chr10 | 2134832 | 1.60% | 3288 |
| chr11 | 2305356 | 1.71% | 3446 |
| chr12 | 2306308 | 1.73% | 3502 |
| chr13 | 967950 | 0.85% | 1487 |
| chr14 | 1606841 | 1.50% | 2499 |
| chr15 | 1540611 | 1.51% | 2390 |
| chr16 | 1776177 | 1.97% | 2620 |
| chr17 | 2468836 | 2.97% | 3600 |
| chr18 | 769627 | 0.96% | 1219 |
| chr19 | 2289473 | 3.91% | 3260 |
| chr20 | 1257983 | 1.95% | 1959 |
| chr21 | 579434 | 1.24% | 851 |
| chr22 | 1059506 | 2.08% | 1577 |
| chrX | 1247835 | 0.80% | 1830 |
| chrY | 56485 | 0.10% | 86 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 69310 | 150 | 3381 | 658.98 | 560 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF706APW.bed.gz | 3.14 MB | 5c912918d45cba84fe2350dad4f030b4 |
| ENCFF706APW.tabix.bed.gz | 800.39 KB | 065ec20d6721ff6c65b3e6642b45f865 |
| ENCFF706APW.tabix.bed.gz.tbi | 313.28 KB | 5be25dfca97cef6f22ea1a909b53cea3 |
| genomic_resource.yaml | 2.56 KB | f21b25967179e8b48024b2a3a77925a3 |
| statistics/ |