Resource

Id ATAC-seq/ENCSR544YXVcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR544YXV [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 1 hour"]
Description
Labels
  • accession: ENCSR544YXV
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 1 hour
  • date_created: 2016-10-12T02:41:15.645174+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR544YXV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR544YXV float

ATAC-seq_ENCSR544YXV
ATAC-seq ENCSR544YXV [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 1 hour"]
 HISTOGRAM FOR ATAC-seq_ENCSR544YXV [1.34, 39.3]
n
47,511,152
mean
7.53
sd
4.13

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 475111521.48% 110673
chr1 4205305 1.69% 9651
chr2 3986704 1.65% 9559
chr3 3188158 1.61% 7594
chr4 2332736 1.23% 5594
chr5 2638030 1.45% 6290
chr6 2906842 1.70% 6848
chr7 2603891 1.63% 6090
chr8 2344931 1.62% 5598
chr9 1978724 1.43% 4657
chr10 2304282 1.72% 5465
chr11 2351771 1.74% 5485
chr12 2330141 1.75% 5480
chr13 1196186 1.05% 2881
chr14 1495440 1.40% 3446
chr15 1433101 1.41% 3363
chr16 1538298 1.70% 3361
chr17 1871856 2.25% 4077
chr18 1107342 1.38% 2629
chr19 1629410 2.78% 3223
chr20 1224521 1.90% 2858
chr21 602628 1.29% 1379
chr22 778421 1.53% 1709
chrX 1459498 0.94% 3424
chrY 2936 0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 110673 150 3206 429.29 353
global segment-length histogram

Files

Filename Size md5
ENCFF769NLM.bed.gz 3.61 MB ec62caf11b969648f8fc0c815a7e09c7
ENCFF769NLM.tabix.bed.gz 1.19 MB efcfc87c4ba6f0c445f4217044363767
ENCFF769NLM.tabix.bed.gz.tbi 456.93 KB fa41ca37352b5ca41ee6566cf430adac
genomic_resource.yaml 1.57 KB 48bd0ddbca5f765e2b34c5658bf1f2b6
statistics/