type: position_score
table:
  filename: ENCFF321VDH.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: ATAC-seq_ENCSR541KFY
  column_index: 3
  type: float
  desc: 'ATAC-seq ENCSR541KFY [biosample_summary="Homo sapiens WTC11"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ATAC-seq ENCSR541KFY [biosample_summary="Homo sapiens WTC11"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: pseudoreplicated peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN873DEH|/analyses/ENCAN873DEH/} has in progress\
    \ subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/}\n\
    \n**audit\\_warning**: NRF (Non Redundant Fraction) is equal to the result of\
    \ the division of the number of reads after duplicates removal by the total number\
    \ of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate\
    \ complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but\
    \ > 0.7 is acceptable. ENCODE processed file {ENCFF240QKT|/files/ENCFF240QKT/}\
    \ processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library\
    \ with NRF value of 0.78632.\n\n**audit\\_warning**: PBC1 (PCR Bottlenecking Coefficient\
    \ 1, M1/M\\_distinct) is the ratio of the number of genomic locations where  exactly\
    \ one read maps uniquely (M1) to the number of genomic locations where some reads\
    \ map (M\\_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking,\
    \ 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and >\
    \ 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable.\
    \ ENCODE processed file {ENCFF240QKT|/files/ENCFF240QKT/} processed by ATAC-seq\
    \ ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value\
    \ of 0.79.\n\n**audit\\_warning**: NRF (Non Redundant Fraction) is equal to the\
    \ result of the division of the number of reads after duplicates removal by the\
    \ total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and\
    \ 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended,\
    \ but > 0.7 is acceptable. ENCODE processed file {ENCFF127KFG|/files/ENCFF127KFG/}\
    \ processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library\
    \ with NRF value of 0.773355.\n\n**audit\\_warning**: PBC1 (PCR Bottlenecking\
    \ Coefficient 1, M1/M\\_distinct) is the ratio of the number of genomic locations\
    \ where  exactly one read maps uniquely (M1) to the number of genomic locations\
    \ where some reads map (M\\_distinct). A PBC1 value in the range 0 - 0.5 is severe\
    \ bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking,\
    \ and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is\
    \ acceptable. ENCODE processed file {ENCFF127KFG|/files/ENCFF127KFG/} processed\
    \ by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with\
    \ a PBC1 value of 0.77."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR541KFY
    status: released
    assay_term_name: ATAC-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens WTC11
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0009747/
    perturbed: false
    doi: 10.17989/ENCSR541KFY
    date_created: '2020-10-28T16:15:15.051648+00:00'
    date_released: '2021-06-24'
    submitter_comment: ''