Resource

Id ATAC-seq/ENCSR540BMLcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR540BML [biosample_summary="Homo sapiens subcutaneous adipose tissue tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR540BML
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002190/
  • biosample_summary: Homo sapiens subcutaneous adipose tissue tissue female adult (53 years)
  • date_created: 2016-04-26T18:56:17.316019+00:00
  • date_released: 2016-06-15
  • doi: 10.17989/ENCSR540BML
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR540BML float

ATAC-seq_ENCSR540BML
ATAC-seq ENCSR540BML [biosample_summary="Homo sapiens subcutaneous adipose tissue tissue female adult (53 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR540BML [1.31, 26.7]
n
47,150,369
mean
4.79
sd
2.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 471503691.47% 74162
chr1 4662403 1.87% 7206
chr2 3703732 1.53% 5969
chr3 2898709 1.46% 4671
chr4 2038659 1.07% 3286
chr5 2396666 1.32% 3871
chr6 2613035 1.53% 4154
chr7 2412758 1.51% 3816
chr8 2040503 1.41% 3350
chr9 2141308 1.55% 3369
chr10 2330418 1.74% 3760
chr11 2501002 1.85% 3848
chr12 2278187 1.71% 3549
chr13 1110838 0.97% 1801
chr14 1525346 1.42% 2377
chr15 1622291 1.59% 2536
chr16 1718686 1.90% 2662
chr17 2313447 2.78% 3473
chr18 930252 1.16% 1550
chr19 1857937 3.17% 2622
chr20 1261900 1.96% 2014
chr21 634692 1.36% 1011
chr22 1027253 2.02% 1587
chrX 1129378 0.72% 1676
chrY 969 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74162 150 3105 635.78 534
global segment-length histogram

Files

Filename Size md5
ENCFF747BPE.bed.gz 3.36 MB b7d68ef630c64cdb097d2463c5982104
ENCFF747BPE.tabix.bed.gz 854.86 KB 369bd6853fc748bc375f38a86a8a46da
ENCFF747BPE.tabix.bed.gz.tbi 354.35 KB cb0c7dc35e072fe2dac1ca59e43f7ddc
genomic_resource.yaml 1.68 KB 8cbc716232717c0f41212bc183b2c53a
statistics/