Resource
| Id | ATAC-seq/ENCSR528YDD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR528YDD [biosample_summary="Homo sapiens HG03342"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN708CEW|/analyses/ENCAN708CEW/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF848NBQ|/files/ENCFF848NBQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.893092. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF848NBQ|/files/ENCFF848NBQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR528YDD | float |
ATAC-seq_ENCSR528YDD |
ATAC-seq ENCSR528YDD [biosample_summary="Homo sapiens HG03342"]
|
 |
[1.37, 35] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 56325447 | 1.75% | 107717 |
| chr1 | 5025890 | 2.02% | 9431 |
| chr2 | 5060201 | 2.09% | 9946 |
| chr3 | 4049987 | 2.04% | 8017 |
| chr4 | 3493054 | 1.84% | 7014 |
| chr5 | 3522373 | 1.94% | 6920 |
| chr6 | 3834997 | 2.25% | 7386 |
| chr7 | 3209619 | 2.01% | 6199 |
| chr8 | 2862221 | 1.97% | 5675 |
| chr9 | 2214380 | 1.60% | 4229 |
| chr10 | 2682546 | 2.00% | 5161 |
| chr11 | 2650709 | 1.96% | 5012 |
| chr12 | 2780514 | 2.09% | 5237 |
| chr13 | 1562351 | 1.37% | 3107 |
| chr14 | 1629673 | 1.52% | 3018 |
| chr15 | 1529937 | 1.50% | 2859 |
| chr16 | 1490867 | 1.65% | 2632 |
| chr17 | 1798889 | 2.16% | 3141 |
| chr18 | 1250279 | 1.56% | 2515 |
| chr19 | 1417400 | 2.42% | 2227 |
| chr20 | 1098918 | 1.71% | 2094 |
| chr21 | 473384 | 1.01% | 829 |
| chr22 | 648173 | 1.28% | 1096 |
| chrX | 2038763 | 1.31% | 3971 |
| chrY | 322 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 107717 | 150 | 2983 | 522.9 | 431 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF806ZOU.bed.gz | 4.13 MB | 78065d2c6a3ea9a9170b030e95458fc9 |
| ENCFF806ZOU.tabix.bed.gz | 1.18 MB | a7fd0bc472e55ef713fa80e476fb81a9 |
| ENCFF806ZOU.tabix.bed.gz.tbi | 468.88 KB | 9a34c8df7b7e278a394865feda117140 |
| genomic_resource.yaml | 2.49 KB | b8f0d284d0e6809d54313e7826719715 |
| statistics/ |