Resource
| Id | ATAC-seq/ENCSR524CPZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR524CPZ [biosample_summary="Homo sapiens HG02798"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN235WQK|/analyses/ENCAN235WQK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF960AXI|/files/ENCFF960AXI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.625936. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF960AXI|/files/ENCFF960AXI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.70. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR524CPZ | float |
ATAC-seq_ENCSR524CPZ |
ATAC-seq ENCSR524CPZ [biosample_summary="Homo sapiens HG02798"]
|
 |
[1.41, 37.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 64437421 | 2.00% | 127236 |
| chr1 | 5791099 | 2.33% | 11190 |
| chr2 | 5779552 | 2.39% | 11771 |
| chr3 | 4604141 | 2.32% | 9390 |
| chr4 | 4056541 | 2.13% | 8474 |
| chr5 | 4046702 | 2.23% | 8246 |
| chr6 | 4404870 | 2.58% | 8774 |
| chr7 | 3659402 | 2.30% | 7328 |
| chr8 | 3334781 | 2.30% | 6801 |
| chr9 | 2516373 | 1.82% | 4960 |
| chr10 | 3042641 | 2.27% | 6092 |
| chr11 | 3066868 | 2.27% | 5974 |
| chr12 | 3127996 | 2.35% | 6078 |
| chr13 | 1868461 | 1.63% | 3836 |
| chr14 | 1852261 | 1.73% | 3553 |
| chr15 | 1712752 | 1.68% | 3310 |
| chr16 | 1725819 | 1.91% | 3140 |
| chr17 | 2091592 | 2.51% | 3689 |
| chr18 | 1512792 | 1.88% | 3112 |
| chr19 | 1610066 | 2.75% | 2599 |
| chr20 | 1291000 | 2.00% | 2558 |
| chr21 | 594354 | 1.27% | 1110 |
| chr22 | 792361 | 1.56% | 1349 |
| chrX | 1807708 | 1.16% | 3563 |
| chrY | 147289 | 0.26% | 339 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 127236 | 150 | 2907 | 506.44 | 416 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF986ZDE.bed.gz | 4.57 MB | 90ea0ede56372f7ab6400d4db242577d |
| ENCFF986ZDE.tabix.bed.gz | 1.37 MB | 069b53ef451e5744d595b5a8a71eab47 |
| ENCFF986ZDE.tabix.bed.gz.tbi | 514.66 KB | 56c3a9c52e00c9633cc2e9ea724d7f9b |
| genomic_resource.yaml | 2.49 KB | aebad651ca30a62c3c3e3870e3bbd017 |
| statistics/ |