Resource

Id ATAC-seq/ENCSR515CDWcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR515CDW [biosample_summary="Homo sapiens body of pancreas tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR515CDW
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001150/
  • biosample_summary: Homo sapiens body of pancreas tissue female adult (53 years)
  • date_created: 2017-02-07T01:41:09.376485+00:00
  • date_released: 2017-06-21
  • doi: 10.17989/ENCSR515CDW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR515CDW float

ATAC-seq_ENCSR515CDW

ATAC-seq ENCSR515CDW [biosample_summary="Homo sapiens body of pancreas tissue female adult (53 years)"]
HISTOGRAM FOR ATAC-seq_ENCSR515CDW [1.94, 16]
n
8,999,310
mean
4.6
sd
1.66

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89993100.28% 22660
chr1 858939 0.35% 2135
chr2 686438 0.28% 1745
chr3 577634 0.29% 1452
chr4 476414 0.25% 1235
chr5 482219 0.27% 1244
chr6 497224 0.29% 1237
chr7 475316 0.30% 1184
chr8 423258 0.29% 1100
chr9 410678 0.30% 1023
chr10 413956 0.31% 1070
chr11 444234 0.33% 1086
chr12 430957 0.32% 1079
chr13 230092 0.20% 598
chr14 292254 0.27% 712
chr15 247525 0.24% 637
chr16 323553 0.36% 802
chr17 376154 0.45% 921
chr18 184435 0.23% 472
chr19 410074 0.70% 949
chr20 211338 0.33% 559
chr21 119057 0.25% 287
chr22 160580 0.32% 410
chrX 266234 0.17% 720
chrY 747 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22660 150 1925 397.15 348
global segment-length histogram

Files

Filename Size md5
ENCFF197KIH.bed.gz 545.56 KB 43b96b5365d72acd33c2a775b891d948
ENCFF197KIH.tabix.bed.gz 239.97 KB b2d5e9c1aa72029599aff121bd1a00bf
ENCFF197KIH.tabix.bed.gz.tbi 175.26 KB 2863da4bca6fde66cc2d5a39b4de66ed
genomic_resource.yaml 1.64 KB 10c21637c5e35e60079fe4847f1ec7d2
statistics/