Resource
| Id | ATAC-seq/ENCSR512YXO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR512YXO [biosample_summary="Homo sapiens GM21381"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN639YTK|/analyses/ENCAN639YTK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF717IQY|/files/ENCFF717IQY/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.877338. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF717IQY|/files/ENCFF717IQY/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR512YXO | float |
ATAC-seq_ENCSR512YXO |
ATAC-seq ENCSR512YXO [biosample_summary="Homo sapiens GM21381"]
|
 |
[1.43, 38.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 52564899 | 1.63% | 96542 |
| chr1 | 4856063 | 1.95% | 8747 |
| chr2 | 4521539 | 1.87% | 8554 |
| chr3 | 3662892 | 1.85% | 6949 |
| chr4 | 2973177 | 1.56% | 5808 |
| chr5 | 3167783 | 1.74% | 5993 |
| chr6 | 3561349 | 2.09% | 6600 |
| chr7 | 2886855 | 1.81% | 5425 |
| chr8 | 2590171 | 1.78% | 4919 |
| chr9 | 2118610 | 1.53% | 3895 |
| chr10 | 2557885 | 1.91% | 4766 |
| chr11 | 2476982 | 1.83% | 4501 |
| chr12 | 2604437 | 1.95% | 4744 |
| chr13 | 1402277 | 1.23% | 2627 |
| chr14 | 1611281 | 1.51% | 2877 |
| chr15 | 1525320 | 1.50% | 2742 |
| chr16 | 1514398 | 1.68% | 2552 |
| chr17 | 1851208 | 2.22% | 3109 |
| chr18 | 1179289 | 1.47% | 2269 |
| chr19 | 1475738 | 2.52% | 2257 |
| chr20 | 1145193 | 1.78% | 2086 |
| chr21 | 530071 | 1.13% | 930 |
| chr22 | 706839 | 1.39% | 1152 |
| chrX | 1542192 | 0.99% | 2833 |
| chrY | 103350 | 0.18% | 207 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 96542 | 150 | 3260 | 544.48 | 451 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF980BJM.bed.gz | 3.72 MB | bce696f85c07a516a5c0f2625cee6826 |
| ENCFF980BJM.tabix.bed.gz | 1.06 MB | ce79be63ce02fa3907f152c378c063ba |
| ENCFF980BJM.tabix.bed.gz.tbi | 431.99 KB | 81f504e122e45733a36fa2a1e7f31a8c |
| genomic_resource.yaml | 2.49 KB | 8ede24714f6d2062e598bd8f8586345f |
| statistics/ |