Resource
| Id | ATAC-seq/ENCSR512FHU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR512FHU [biosample_summary="Homo sapiens GM19023"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN415WAT|/analyses/ENCAN415WAT/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF949CVL|/files/ENCFF949CVL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.817899. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF949CVL|/files/ENCFF949CVL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR512FHU | float |
ATAC-seq_ENCSR512FHU |
ATAC-seq ENCSR512FHU [biosample_summary="Homo sapiens GM19023"]
|
 |
[1.54, 34.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53595590 | 1.67% | 95488 |
| chr1 | 4741080 | 1.90% | 8310 |
| chr2 | 4700736 | 1.94% | 8577 |
| chr3 | 3794201 | 1.91% | 6913 |
| chr4 | 3164380 | 1.66% | 5893 |
| chr5 | 3288153 | 1.81% | 5972 |
| chr6 | 3606237 | 2.11% | 6477 |
| chr7 | 3028596 | 1.90% | 5443 |
| chr8 | 2694901 | 1.86% | 4956 |
| chr9 | 2076975 | 1.50% | 3693 |
| chr10 | 2565937 | 1.92% | 4619 |
| chr11 | 2589627 | 1.92% | 4559 |
| chr12 | 2618428 | 1.96% | 4611 |
| chr13 | 1512957 | 1.32% | 2776 |
| chr14 | 1648971 | 1.54% | 2887 |
| chr15 | 1489588 | 1.46% | 2631 |
| chr16 | 1476745 | 1.63% | 2427 |
| chr17 | 1757405 | 2.11% | 2902 |
| chr18 | 1251379 | 1.56% | 2324 |
| chr19 | 1417469 | 2.42% | 2185 |
| chr20 | 1073506 | 1.67% | 1932 |
| chr21 | 499676 | 1.07% | 851 |
| chr22 | 660460 | 1.30% | 1080 |
| chrX | 1937311 | 1.24% | 3467 |
| chrY | 872 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 95488 | 150 | 2816 | 561.28 | 466 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF283LXY.bed.gz | 3.71 MB | baac6361a9011e94db5f3c34eaa6cc71 |
| ENCFF283LXY.tabix.bed.gz | 1.03 MB | f8048506e7f8a7d91483d401c7845971 |
| ENCFF283LXY.tabix.bed.gz.tbi | 441.99 KB | 3976ef7e3f27a87cb8cb6222aa201ede |
| genomic_resource.yaml | 2.49 KB | c42c7cc09b8e4eb9cdafa49dd2420bf6 |
| statistics/ |