Resource

Id ATAC-seq/ENCSR509JPTcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR509JPT [biosample_summary="Homo sapiens GM21367"]
Description
Labels
  • accession: ENCSR509JPT
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0015900/
  • biosample_summary: Homo sapiens GM21367
  • date_created: 2020-11-24T22:02:39.501357+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR509JPT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR509JPT float

ATAC-seq_ENCSR509JPT
ATAC-seq ENCSR509JPT [biosample_summary="Homo sapiens GM21367"]
 HISTOGRAM FOR ATAC-seq_ENCSR509JPT [1.57, 36.9]
n
47,539,277
mean
6.84
sd
3.44

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 475392771.48% 97668
chr1 4274683 1.72% 8601
chr2 4184569 1.73% 8847
chr3 3403250 1.72% 7205
chr4 2774253 1.46% 5973
chr5 2912735 1.60% 6171
chr6 3259034 1.91% 6795
chr7 2662382 1.67% 5581
chr8 2397087 1.65% 5079
chr9 1909185 1.38% 3918
chr10 2271193 1.70% 4711
chr11 2283300 1.69% 4647
chr12 2374759 1.78% 4848
chr13 1327654 1.16% 2800
chr14 1472354 1.38% 2955
chr15 1350270 1.32% 2721
chr16 1276220 1.41% 2412
chr17 1564176 1.88% 2922
chr18 1079251 1.34% 2313
chr19 1227263 2.09% 2067
chr20 972011 1.51% 1996
chr21 488345 1.05% 954
chr22 556305 1.09% 1007
chrX 1430031 0.92% 2948
chrY 88967 0.16% 197
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 97668 150 2609 486.74 402
global segment-length histogram

Files

Filename Size md5
ENCFF218UOX.bed.gz 3.44 MB 8e8463f3bf7fa91ef7f924d1b89d9c97
ENCFF218UOX.tabix.bed.gz 1.05 MB 755d7c07f5a4639e799e4dc6d30c588d
ENCFF218UOX.tabix.bed.gz.tbi 445.75 KB 538c8353f81832a42566cf0b7a2ad05f
genomic_resource.yaml 1.28 KB 54884f976c16ba921ec29b683c46f89e
statistics/