Resource
| Id | ATAC-seq/ENCSR504OUW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR504OUW [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (38 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (38 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN633LER|/analyses/ENCAN633LER/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF205TSU|/files/ENCFF205TSU/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 23958966 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF754GUE|/files/ENCFF754GUE/} (overlap peaks) and {ENCFF284FAV|/files/ENCFF284FAV/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline have 86734 and 52643 peaks. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR504OUW | float |
ATAC-seq_ENCSR504OUW |
ATAC-seq ENCSR504OUW [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (38 years)"]
|
 |
[1.62, 42.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 28634200 | 0.89% | 56408 |
| chr1 | 2862462 | 1.15% | 5638 |
| chr2 | 2216351 | 0.92% | 4458 |
| chr3 | 1713008 | 0.86% | 3438 |
| chr4 | 1072572 | 0.56% | 2087 |
| chr5 | 1346042 | 0.74% | 2672 |
| chr6 | 1714847 | 1.00% | 3422 |
| chr7 | 1400737 | 0.88% | 2742 |
| chr8 | 1102887 | 0.76% | 2220 |
| chr9 | 1115176 | 0.81% | 2234 |
| chr10 | 1362482 | 1.02% | 2743 |
| chr11 | 1441189 | 1.07% | 2876 |
| chr12 | 1459500 | 1.10% | 2841 |
| chr13 | 632491 | 0.55% | 1263 |
| chr14 | 1004063 | 0.94% | 1988 |
| chr15 | 930775 | 0.91% | 1834 |
| chr16 | 1092237 | 1.21% | 2081 |
| chr17 | 1566639 | 1.88% | 3002 |
| chr18 | 498970 | 0.62% | 1021 |
| chr19 | 1453938 | 2.48% | 2682 |
| chr20 | 757372 | 1.18% | 1510 |
| chr21 | 394493 | 0.84% | 760 |
| chr22 | 679773 | 1.34% | 1319 |
| chrX | 778140 | 0.50% | 1496 |
| chrY | 38056 | 0.07% | 81 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 56408 | 150 | 2470 | 507.63 | 425 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF754GUE.bed.gz | 2.12 MB | 4bc3da42fa6e6fffd18f84c5112eabb9 |
| ENCFF754GUE.tabix.bed.gz | 641.13 KB | f89dcf4d0bad5bf33439a1e864dcc23d |
| ENCFF754GUE.tabix.bed.gz.tbi | 281.86 KB | 6f1001f0a4b4bab0f6962f857bc8f678 |
| genomic_resource.yaml | 2.44 KB | 14bfe8abd7e7ffcc6cfafd3d8cbd3234 |
| statistics/ |