Resource
| Id | ATAC-seq/ENCSR496PPU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR496PPU [biosample_summary="Homo sapiens mucosa of descending colon tissue female adult (61 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN475YCD|/analyses/ENCAN475YCD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF253LIK|/files/ENCFF253LIK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.829336. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF253LIK|/files/ENCFF253LIK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR496PPU | float |
ATAC-seq_ENCSR496PPU |
ATAC-seq ENCSR496PPU [biosample_summary="Homo sapiens mucosa of descending colon tissue female adult (61 years)"]
|
 |
[1.3, 38.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 94245569 | 2.93% | 179118 |
| chr1 | 9089974 | 3.65% | 17122 |
| chr2 | 7606622 | 3.14% | 14933 |
| chr3 | 5789376 | 2.92% | 11471 |
| chr4 | 4291700 | 2.26% | 8602 |
| chr5 | 4716936 | 2.60% | 9270 |
| chr6 | 5467524 | 3.20% | 10610 |
| chr7 | 4860249 | 3.05% | 9275 |
| chr8 | 3904295 | 2.69% | 7707 |
| chr9 | 4189961 | 3.03% | 7910 |
| chr10 | 4557119 | 3.41% | 8826 |
| chr11 | 4849363 | 3.59% | 8947 |
| chr12 | 4467140 | 3.35% | 8585 |
| chr13 | 2180893 | 1.91% | 4285 |
| chr14 | 3139419 | 2.93% | 5878 |
| chr15 | 3231541 | 3.17% | 6076 |
| chr16 | 3472061 | 3.84% | 6161 |
| chr17 | 4628160 | 5.56% | 8106 |
| chr18 | 1944533 | 2.42% | 3894 |
| chr19 | 3454385 | 5.89% | 5730 |
| chr20 | 2605730 | 4.04% | 5017 |
| chr21 | 1276637 | 2.73% | 2329 |
| chr22 | 2071691 | 4.08% | 3626 |
| chrX | 2446843 | 1.57% | 4743 |
| chrY | 3417 | 0.01% | 15 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 179118 | 150 | 3786 | 526.16 | 408 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF721WEZ.bed.gz | 6.61 MB | 915e031eacece6b6357af451533ab1f2 |
| ENCFF721WEZ.tabix.bed.gz | 1.95 MB | b8a028ef05c150340252db75d808fc3f |
| ENCFF721WEZ.tabix.bed.gz.tbi | 518.38 KB | 8b383b60f3cb99e70412d48fea22220d |
| genomic_resource.yaml | 2.62 KB | f0913ca29579874995e8eee10c290fcb |
| statistics/ |