Resource
| Id | ATAC-seq/ENCSR492FJO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR492FJO [biosample_summary="Homo sapiens GM18867"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN537TFI|/analyses/ENCAN537TFI/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF500EBK|/files/ENCFF500EBK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.731411. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF500EBK|/files/ENCFF500EBK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.74. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR492FJO | float |
ATAC-seq_ENCSR492FJO |
ATAC-seq ENCSR492FJO [biosample_summary="Homo sapiens GM18867"]
|
 |
[1.35, 47.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 66456536 | 2.07% | 127669 |
| chr1 | 5885136 | 2.36% | 11106 |
| chr2 | 5979101 | 2.47% | 11747 |
| chr3 | 4789855 | 2.42% | 9422 |
| chr4 | 4210395 | 2.21% | 8540 |
| chr5 | 4150298 | 2.29% | 8138 |
| chr6 | 4527581 | 2.65% | 8770 |
| chr7 | 3768854 | 2.37% | 7392 |
| chr8 | 3474298 | 2.39% | 6892 |
| chr9 | 2605861 | 1.88% | 4987 |
| chr10 | 3153352 | 2.36% | 6117 |
| chr11 | 3115630 | 2.31% | 5945 |
| chr12 | 3264946 | 2.45% | 6219 |
| chr13 | 1902226 | 1.66% | 3745 |
| chr14 | 1937645 | 1.81% | 3657 |
| chr15 | 1701205 | 1.67% | 3205 |
| chr16 | 1712067 | 1.90% | 3045 |
| chr17 | 1975955 | 2.37% | 3403 |
| chr18 | 1622656 | 2.02% | 3258 |
| chr19 | 1582055 | 2.70% | 2443 |
| chr20 | 1336476 | 2.07% | 2565 |
| chr21 | 646095 | 1.38% | 1191 |
| chr22 | 731131 | 1.44% | 1237 |
| chrX | 2382389 | 1.53% | 4640 |
| chrY | 1329 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 127669 | 150 | 2899 | 520.54 | 427 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF094CWB.bed.gz | 4.81 MB | 2af888c266754d29028419f484fafc0b |
| ENCFF094CWB.tabix.bed.gz | 1.39 MB | 85fd6350dff87e3f88b71f2e7c4a3101 |
| ENCFF094CWB.tabix.bed.gz.tbi | 519.42 KB | 5c755b6d260ff7f4ae3b724195c2df15 |
| genomic_resource.yaml | 2.49 KB | bb7d4cc82e52a8ce7cbd35358d868b15 |
| statistics/ |