Resource

Id ATAC-seq/ENCSR491VXJcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR491VXJ [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (26 years)"]
Description
Labels
  • accession: ENCSR491VXJ
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004992/
  • biosample_summary: Homo sapiens mucosa of descending colon tissue male adult (26 years)
  • date_created: 2019-05-25T19:54:42.424824+00:00
  • date_released: 2020-08-17
  • doi: 10.17989/ENCSR491VXJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (26 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR491VXJ float

ATAC-seq_ENCSR491VXJ
ATAC-seq ENCSR491VXJ [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (26 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR491VXJ [1.19, 39.5]
n
91,225,750
mean
6.8
sd
3.67

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 912257502.84% 148227
chr1 8900153 3.57% 14171
chr2 7227516 2.98% 12023
chr3 5559140 2.80% 9337
chr4 4296077 2.26% 7352
chr5 4539833 2.50% 7675
chr6 5190991 3.04% 8545
chr7 4651994 2.92% 7622
chr8 3656686 2.52% 6177
chr9 4062204 2.94% 6547
chr10 4308502 3.22% 7182
chr11 4649477 3.44% 7471
chr12 4362090 3.27% 7113
chr13 2153289 1.88% 3625
chr14 3020834 2.82% 4857
chr15 3181954 3.12% 5097
chr16 3321940 3.68% 5093
chr17 4606223 5.53% 6885
chr18 1858929 2.31% 3234
chr19 3440695 5.87% 4926
chr20 2433271 3.78% 4031
chr21 1234075 2.64% 1922
chr22 1935536 3.81% 2848
chrX 2370936 1.52% 4008
chrY 263405 0.46% 486
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 148227 150 3974 615.45 467
global segment-length histogram

Files

Filename Size md5
ENCFF895THD.bed.gz 6.61 MB 5cf2597507f7bbcf597f62ace3dab9ab
ENCFF895THD.tabix.bed.gz 1.64 MB c20a79af5afe417a6660b7af1b10fac6
ENCFF895THD.tabix.bed.gz.tbi 465.42 KB d7dab1c3af025f7e44fa5118fb25eec2
genomic_resource.yaml 1.67 KB 1ea713641a2201b0f2077bf63368784f
statistics/