Resource

Id ATAC-seq/ENCSR490MSGcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR490MSG [biosample_summary="Homo sapiens ovary tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR490MSG
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (53 years)
  • date_created: 2016-10-31T19:16:11.247958+00:00
  • date_released: 2016-10-31
  • doi: 10.17989/ENCSR490MSG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR490MSG float

ATAC-seq_ENCSR490MSG
ATAC-seq ENCSR490MSG [biosample_summary="Homo sapiens ovary tissue female adult (53 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR490MSG [1.6, 23.5]
n
18,818,164
mean
3.84
sd
1.48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 188181640.58% 32235
chr1 1685734 0.68% 2809
chr2 1433549 0.59% 2499
chr3 1150658 0.58% 1960
chr4 1091851 0.57% 1935
chr5 1068160 0.59% 1902
chr6 1096893 0.64% 1912
chr7 1002229 0.63% 1714
chr8 801350 0.55% 1442
chr9 802933 0.58% 1348
chr10 819951 0.61% 1427
chr11 971170 0.72% 1614
chr12 861469 0.65% 1427
chr13 520641 0.46% 913
chr14 578974 0.54% 966
chr15 563206 0.55% 919
chr16 615853 0.68% 1033
chr17 789919 0.95% 1299
chr18 450739 0.56% 805
chr19 807671 1.38% 1333
chr20 428270 0.66% 741
chr21 248902 0.53% 416
chr22 350693 0.69% 597
chrX 676327 0.43% 1220
chrY 1022 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32235 150 2541 583.78 494
global segment-length histogram

Files

Filename Size md5
ENCFF744SPD.bed.gz 1.22 MB e59e8ec338c45a159f2460d32459bea1
ENCFF744SPD.tabix.bed.gz 366.18 KB da3cabe0d96d39bcce856bb6adfeb250
ENCFF744SPD.tabix.bed.gz.tbi 228.08 KB 0770b372863a5ba7a3a8c2b2369797fb
genomic_resource.yaml 1.61 KB a1c7168cf2525728192a64f23822f7a5
statistics/