Resource

Id ATAC-seq/ENCSR487SOPcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR487SOP [biosample_summary="Homo sapiens HG03064"]
Description
Labels
  • accession: ENCSR487SOP
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0010864/
  • biosample_summary: Homo sapiens HG03064
  • date_created: 2020-11-24T22:02:41.723014+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR487SOP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR487SOP float

ATAC-seq_ENCSR487SOP
ATAC-seq ENCSR487SOP [biosample_summary="Homo sapiens HG03064"]
 HISTOGRAM FOR ATAC-seq_ENCSR487SOP [1.49, 37]
n
44,524,190
mean
6.56
sd
2.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 445241901.38% 78652
chr1 4056211 1.63% 7068
chr2 3839237 1.59% 6898
chr3 3123964 1.58% 5666
chr4 2518610 1.32% 4655
chr5 2698341 1.49% 4889
chr6 3049317 1.79% 5473
chr7 2508637 1.57% 4508
chr8 2208124 1.52% 3988
chr9 1785747 1.29% 3130
chr10 2140326 1.60% 3800
chr11 2110506 1.56% 3728
chr12 2223167 1.67% 3894
chr13 1240389 1.08% 2229
chr14 1372976 1.28% 2374
chr15 1270062 1.25% 2203
chr16 1284402 1.42% 2147
chr17 1489998 1.79% 2453
chr18 986069 1.23% 1791
chr19 1209419 2.06% 1835
chr20 884746 1.37% 1537
chr21 413864 0.89% 687
chr22 560467 1.10% 916
chrX 1549099 0.99% 2781
chrY 512 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 78652 150 2781 566.09 479
global segment-length histogram

Files

Filename Size md5
ENCFF378XZA.bed.gz 3.2 MB 2e1805b06994f29479e3bb22027584ea
ENCFF378XZA.tabix.bed.gz 897.09 KB 68c2ba0076ae1622be0d7d774d0febb4
ENCFF378XZA.tabix.bed.gz.tbi 373.22 KB 633557bdc3c84717f5bac8ff6e6af782
genomic_resource.yaml 1.66 KB e37e601772d34d849001ad48293870b8
statistics/