Resource

Id ATAC-seq/ENCSR485TLPcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR485TLP [biosample_summary="Homo sapiens GM23338"]
Description
Labels
  • accession: ENCSR485TLP
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007950/
  • biosample_summary: Homo sapiens GM23338
  • date_created: 2019-07-31T03:22:23.599629+00:00
  • date_released: 2020-08-05
  • doi: 10.17989/ENCSR485TLP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR485TLP float

ATAC-seq_ENCSR485TLP
ATAC-seq ENCSR485TLP [biosample_summary="Homo sapiens GM23338"]
 HISTOGRAM FOR ATAC-seq_ENCSR485TLP [1.48, 36.7]
n
121,745,659
mean
7.07
sd
3.62

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1217456593.78% 172501
chr1 11464485 4.61% 15851
chr2 9720641 4.01% 14159
chr3 7372419 3.72% 10948
chr4 5574288 2.93% 8627
chr5 6517307 3.59% 9624
chr6 7068071 4.14% 10480
chr7 6556299 4.11% 9474
chr8 5256435 3.62% 7710
chr9 5325057 3.85% 7480
chr10 5799064 4.33% 8225
chr11 6485296 4.80% 8818
chr12 5626411 4.22% 7960
chr13 3141330 2.75% 4898
chr14 3851160 3.60% 5406
chr15 4119264 4.04% 5821
chr16 4449698 4.93% 5845
chr17 5584692 6.71% 7106
chr18 2710431 3.37% 4156
chr19 4459467 7.61% 5358
chr20 3331331 5.17% 4565
chr21 1444983 3.09% 2017
chr22 2722897 5.36% 3541
chrX 3028639 1.94% 4217
chrY 135994 0.24% 215
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 172501 150 4177 705.77 583
global segment-length histogram

Files

Filename Size md5
ENCFF567ZCX.bed.gz 7.08 MB 9433d95dc382210fe622ca3534062f16
ENCFF567ZCX.tabix.bed.gz 1.91 MB 52397e2edb3bbe775c71b5c922fda13f
ENCFF567ZCX.tabix.bed.gz.tbi 574.01 KB 8c4e6d7f370420f9e8aeca15f9961a32
genomic_resource.yaml 1.29 KB 818fa1eb5dff70a0807e4d5af5e63396
statistics/