Resource

Id ATAC-seq/ENCSR483RKNcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR483RKN [biosample_summary="Homo sapiens K562"]
Description
Labels
  • accession: ENCSR483RKN
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002067/
  • biosample_summary: Homo sapiens K562
  • date_created: 2020-05-18T06:11:34.021944+00:00
  • date_released: 2020-07-21
  • doi: 10.17989/ENCSR483RKN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR483RKN float

ATAC-seq_ENCSR483RKN
ATAC-seq ENCSR483RKN [biosample_summary="Homo sapiens K562"]
 HISTOGRAM FOR ATAC-seq_ENCSR483RKN [1.25, 42.8]
n
61,478,692
mean
5.78
sd
3.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 614786921.91% 109344
chr1 7223771 2.90% 12726
chr2 4742975 1.96% 8689
chr3 3653335 1.84% 6614
chr4 2454985 1.29% 4536
chr5 2928274 1.61% 5349
chr6 4173425 2.44% 7527
chr7 4062222 2.55% 7467
chr8 2475713 1.71% 4568
chr9 2301509 1.66% 4045
chr10 2682518 2.00% 4897
chr11 3284615 2.43% 5750
chr12 2830548 2.12% 5004
chr13 948481 0.83% 1741
chr14 1516181 1.42% 2613
chr15 1971722 1.93% 3580
chr16 2314486 2.56% 3915
chr17 2806704 3.37% 4695
chr18 928944 1.16% 1771
chr19 2791999 4.76% 4398
chr20 1547757 2.40% 2806
chr21 783574 1.68% 1427
chr22 1408767 2.77% 2395
chrX 1645628 1.05% 2829
chrY 559 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 109344 150 3159 562.25 450
global segment-length histogram

Files

Filename Size md5
ENCFF188BOG.bed.gz 4.83 MB 9183721909983ff768cbfbad6fd1751d
ENCFF188BOG.tabix.bed.gz 1.21 MB 622454f6e2b7b8245b2796fb265f730a
ENCFF188BOG.tabix.bed.gz.tbi 411.2 KB ead6684e43921ebd782c91779a392361
genomic_resource.yaml 1.49 KB 9c599f915452b12f4b29dceaeb1e128a
statistics/