Resource
| Id | ATAC-seq/ENCSR476VJY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR476VJY [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN669YRC|/analyses/ENCAN669YRC/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF895JAV|/files/ENCFF895JAV/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.703773. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF895JAV|/files/ENCFF895JAV/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR476VJY | float |
ATAC-seq_ENCSR476VJY |
ATAC-seq ENCSR476VJY [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)"]
|
 |
[1.28, 46.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 36188301 | 1.12% | 61232 |
| chr1 | 3684196 | 1.48% | 6172 |
| chr2 | 2703228 | 1.12% | 4661 |
| chr3 | 2007152 | 1.01% | 3444 |
| chr4 | 1265834 | 0.67% | 2146 |
| chr5 | 1636258 | 0.90% | 2828 |
| chr6 | 2182836 | 1.28% | 3719 |
| chr7 | 1772815 | 1.11% | 3067 |
| chr8 | 1358684 | 0.94% | 2344 |
| chr9 | 1379056 | 1.00% | 2357 |
| chr10 | 1628421 | 1.22% | 2795 |
| chr11 | 1814927 | 1.34% | 3023 |
| chr12 | 1841124 | 1.38% | 3103 |
| chr13 | 793535 | 0.69% | 1372 |
| chr14 | 1279177 | 1.20% | 2197 |
| chr15 | 1179783 | 1.16% | 2042 |
| chr16 | 1470585 | 1.63% | 2387 |
| chr17 | 2149700 | 2.58% | 3513 |
| chr18 | 596008 | 0.74% | 1064 |
| chr19 | 1962539 | 3.35% | 3147 |
| chr20 | 1007833 | 1.56% | 1707 |
| chr21 | 483792 | 1.04% | 814 |
| chr22 | 882302 | 1.74% | 1463 |
| chrX | 1060497 | 0.68% | 1788 |
| chrY | 48019 | 0.08% | 79 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 61232 | 150 | 3525 | 591 | 494 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF035XXI.bed.gz | 2.48 MB | 4cb11015b2743b579f0cc33e2d76bf8e |
| ENCFF035XXI.tabix.bed.gz | 697.56 KB | d55e02622c77bd4a2ca3fdf79873bb95 |
| ENCFF035XXI.tabix.bed.gz.tbi | 277.62 KB | a8aa745846265339e4d2e2794f8781f4 |
| genomic_resource.yaml | 2.61 KB | c7be479ad17ba33e4428743827f76329 |
| statistics/ |