Resource

Id ATAC-seq/ENCSR459AYScontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR459AYS [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours"]
Description
Labels
  • accession: ENCSR459AYS
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours
  • date_created: 2016-10-11T20:26:57.883080+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR459AYS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 2 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR459AYS float

ATAC-seq_ENCSR459AYS
ATAC-seq ENCSR459AYS [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR459AYS [1.31, 44.4]
n
67,401,699
mean
7.77
sd
4.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 674016992.09% 161273
chr1 6392863 2.57% 15137
chr2 5519081 2.28% 13438
chr3 4395402 2.22% 10699
chr4 3011926 1.58% 7392
chr5 3577504 1.97% 8716
chr6 4051473 2.37% 9784
chr7 3587261 2.25% 8615
chr8 3188451 2.20% 7814
chr9 2911862 2.10% 7003
chr10 3360154 2.51% 8199
chr11 3339209 2.47% 7956
chr12 3336014 2.50% 8033
chr13 1576257 1.38% 3843
chr14 2136733 2.00% 5053
chr15 2175166 2.13% 5287
chr16 2263581 2.51% 5108
chr17 3039453 3.65% 6929
chr18 1444185 1.80% 3525
chr19 2399753 4.09% 5128
chr20 1836174 2.85% 4407
chr21 887907 1.90% 2122
chr22 1234893 2.43% 2803
chrX 1667920 1.07% 4096
chrY 68477 0.12% 186
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 161273 150 3239 417.94 343
global segment-length histogram

Files

Filename Size md5
ENCFF640USO.bed.gz 5.19 MB 68db823f0619c1a3159d80f8d5c9d25a
ENCFF640USO.tabix.bed.gz 1.73 MB ac25b78ab69e5c9d6bdf9fd837c85804
ENCFF640USO.tabix.bed.gz.tbi 511.17 KB 55d798a5297ac6b8197fc1887717162c
genomic_resource.yaml 1.58 KB 6068c00b22ec676abbc0e7e8e31c713c
statistics/