Resource

Id ATAC-seq/ENCSR454UTHcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR454UTH [biosample_summary="Homo sapiens GM19452"]
Description
Labels
  • accession: ENCSR454UTH
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0026846/
  • biosample_summary: Homo sapiens GM19452
  • date_created: 2020-11-24T22:02:38.675182+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR454UTH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR454UTH float

ATAC-seq_ENCSR454UTH

ATAC-seq ENCSR454UTH [biosample_summary="Homo sapiens GM19452"]
HISTOGRAM FOR ATAC-seq_ENCSR454UTH [1.57, 40.9]
n
54,408,087
mean
6.84
sd
3.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 544080871.69% 96194
chr1 4845365 1.95% 8469
chr2 4726965 1.95% 8533
chr3 3847355 1.94% 6946
chr4 3202143 1.68% 5815
chr5 3360464 1.85% 6067
chr6 3696588 2.16% 6588
chr7 3002249 1.88% 5420
chr8 2764334 1.90% 4996
chr9 2189805 1.58% 3846
chr10 2646358 1.98% 4680
chr11 2605045 1.93% 4581
chr12 2680927 2.01% 4716
chr13 1510362 1.32% 2732
chr14 1668045 1.56% 2903
chr15 1530480 1.50% 2679
chr16 1518515 1.68% 2524
chr17 1807982 2.17% 2989
chr18 1289786 1.60% 2358
chr19 1396673 2.38% 2135
chr20 1134428 1.76% 2033
chr21 509413 1.09% 877
chr22 663075 1.30% 1065
chrX 1667818 1.07% 2953
chrY 143912 0.25% 289
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96194 150 2834 565.61 483
global segment-length histogram

Files

Filename Size md5
ENCFF582GKW.bed.gz 3.86 MB b64e2fb7598d38e91f963731f06c87d4
ENCFF582GKW.tabix.bed.gz 1.05 MB ca51d6319a6155eee3a927d837ceebe6
ENCFF582GKW.tabix.bed.gz.tbi 435.75 KB b236ddf0cbf3bc18ec773ae066f660c4
genomic_resource.yaml 1.28 KB 72b8e3161c98ca51400d704869fda569
statistics/