Resource

Id ATAC-seq/ENCSR399OSEcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR399OSE [biosample_summary="Homo sapiens heart left ventricle tissue female adult (47 years)"]
Description
Labels
  • accession: ENCSR399OSE
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002084/
  • biosample_summary: Homo sapiens heart left ventricle tissue female adult (47 years)
  • date_created: 2019-05-29T08:24:45.840507+00:00
  • date_released: 2020-08-17
  • doi: 10.17989/ENCSR399OSE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR399OSE float

ATAC-seq_ENCSR399OSE
ATAC-seq ENCSR399OSE [biosample_summary="Homo sapiens heart left ventricle tissue female adult (47 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR399OSE [1.31, 33.6]
n
85,833,318
mean
4.63
sd
2.64

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 858333182.67% 142238
chr1 8138685 3.27% 13360
chr2 6857772 2.83% 11628
chr3 5383935 2.72% 9248
chr4 3665547 1.93% 6402
chr5 4567492 2.52% 7811
chr6 4679276 2.74% 8091
chr7 4471498 2.81% 7505
chr8 3735294 2.57% 6394
chr9 3688542 2.67% 6007
chr10 4387150 3.28% 7407
chr11 4409939 3.26% 7173
chr12 3976566 2.98% 6632
chr13 2110176 1.85% 3680
chr14 2584151 2.41% 4207
chr15 3058758 3.00% 5042
chr16 3168194 3.51% 4990
chr17 4037853 4.85% 6246
chr18 1913524 2.38% 3349
chr19 3303367 5.64% 4664
chr20 2396146 3.72% 3944
chr21 1164408 2.49% 1883
chr22 2084824 4.10% 3229
chrX 2049000 1.31% 3341
chrY 1221 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 142238 150 3993 603.45 502
global segment-length histogram

Files

Filename Size md5
ENCFF960ZSJ.bed.gz 5.33 MB a5a3c4187318b817013e86457e5a5436
ENCFF960ZSJ.tabix.bed.gz 1.55 MB 6b0d76bfbb9316ba64cf34fac917c81d
ENCFF960ZSJ.tabix.bed.gz.tbi 481.73 KB 97e8413d6a68f465b1d1ec8312875efe
genomic_resource.yaml 1.65 KB 6287b9369a670cd154a53bcd3e86eecb
statistics/