Resource
| Id | ATAC-seq/ENCSR392UJM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR392UJM [biosample_summary="Homo sapiens ovary tissue female adult (61 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN711WZB|/analyses/ENCAN711WZB/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF925ACE|/files/ENCFF925ACE/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.7432. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF925ACE|/files/ENCFF925ACE/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.77. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR392UJM | float |
ATAC-seq_ENCSR392UJM |
ATAC-seq ENCSR392UJM [biosample_summary="Homo sapiens ovary tissue female adult (61 years)"]
|
 |
[1.31, 39.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 105191645 | 3.27% | 168655 |
| chr1 | 9564214 | 3.84% | 15198 |
| chr2 | 8313840 | 3.43% | 13766 |
| chr3 | 6199228 | 3.13% | 10583 |
| chr4 | 4326670 | 2.27% | 7456 |
| chr5 | 5263737 | 2.90% | 8895 |
| chr6 | 5665051 | 3.32% | 9665 |
| chr7 | 5525849 | 3.47% | 8869 |
| chr8 | 4480917 | 3.09% | 7557 |
| chr9 | 4768706 | 3.45% | 7582 |
| chr10 | 5268769 | 3.94% | 8608 |
| chr11 | 5467522 | 4.05% | 8396 |
| chr12 | 4750994 | 3.56% | 7688 |
| chr13 | 2434749 | 2.13% | 4146 |
| chr14 | 3368426 | 3.15% | 5344 |
| chr15 | 3658885 | 3.59% | 5882 |
| chr16 | 4073036 | 4.51% | 6017 |
| chr17 | 5150616 | 6.19% | 7547 |
| chr18 | 2356720 | 2.93% | 4017 |
| chr19 | 4352535 | 7.43% | 5754 |
| chr20 | 3056898 | 4.74% | 4836 |
| chr21 | 1581112 | 3.38% | 2469 |
| chr22 | 2716651 | 5.35% | 3892 |
| chrX | 2842169 | 1.82% | 4471 |
| chrY | 4351 | 0.01% | 17 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 168655 | 150 | 4022 | 623.71 | 501 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF985FDY.bed.gz | 6.15 MB | 7bc73edb0b965d55ff93b533952ef485 |
| ENCFF985FDY.tabix.bed.gz | 1.84 MB | 996df33ced7b9157843c78eba793707a |
| ENCFF985FDY.tabix.bed.gz.tbi | 523.94 KB | 5d8f6cdc127ea857e5bd8b853e7e92b4 |
| genomic_resource.yaml | 2.55 KB | a5a8147a689e4e9b6695f01e2ee59d3f |
| statistics/ |