Resource
| Id | ATAC-seq/ENCSR390SLL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR390SLL [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (42 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (42 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN584LTD|/analyses/ENCAN584LTD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN584LTD|/analyses/ENCAN584LTD/} has in progress subobject document {f8bddd7e-34a4-4ce9-8f2f-367a2e8427e6|/documents/f8bddd7e-34a4-4ce9-8f2f-367a2e8427e6/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF459GAW|/files/ENCFF459GAW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.881712. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF459GAW|/files/ENCFF459GAW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR390SLL | float |
ATAC-seq_ENCSR390SLL |
ATAC-seq ENCSR390SLL [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (42 years)"]
|
 |
[1.35, 39.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 64055076 | 1.99% | 130624 |
| chr1 | 6244528 | 2.51% | 12602 |
| chr2 | 4993984 | 2.06% | 10378 |
| chr3 | 4045788 | 2.04% | 8540 |
| chr4 | 2616281 | 1.38% | 5595 |
| chr5 | 3404003 | 1.88% | 7183 |
| chr6 | 3543238 | 2.07% | 7375 |
| chr7 | 3228794 | 2.03% | 6728 |
| chr8 | 2789737 | 1.92% | 5891 |
| chr9 | 2785523 | 2.01% | 5618 |
| chr10 | 3259416 | 2.44% | 6769 |
| chr11 | 3391782 | 2.51% | 6776 |
| chr12 | 3057871 | 2.29% | 6265 |
| chr13 | 1518681 | 1.33% | 3275 |
| chr14 | 1959550 | 1.83% | 3982 |
| chr15 | 2311255 | 2.27% | 4693 |
| chr16 | 2350175 | 2.60% | 4481 |
| chr17 | 3111598 | 3.74% | 5854 |
| chr18 | 1353212 | 1.68% | 2961 |
| chr19 | 2432022 | 4.15% | 4308 |
| chr20 | 1812307 | 2.81% | 3718 |
| chr21 | 848742 | 1.82% | 1710 |
| chr22 | 1465137 | 2.88% | 2870 |
| chrX | 1531452 | 0.98% | 3052 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 130624 | 150 | 2996 | 490.38 | 382 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF803AAK.bed.gz | 4.63 MB | 7ba74f61012142a2e14af4be7ddaf11f |
| ENCFF803AAK.tabix.bed.gz | 1.4 MB | 6d7971b38ce3997fe7d1c8855e870860 |
| ENCFF803AAK.tabix.bed.gz.tbi | 475.43 KB | 601662cd120dd555c552a972fb5d722c |
| genomic_resource.yaml | 2.81 KB | 1a14ba136b483a54f4047d6399a917b9 |
| statistics/ |