Resource

Id ATAC-seq/ENCSR382LBScontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR382LBS [biosample_summary="Homo sapiens NCI-H929"]
Description
Labels
  • accession: ENCSR382LBS
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001221/
  • biosample_summary: Homo sapiens NCI-H929
  • date_created: 2020-08-11T20:27:37.394431+00:00
  • date_released: 2021-04-06
  • doi: 10.17989/ENCSR382LBS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR382LBS float

ATAC-seq_ENCSR382LBS
ATAC-seq ENCSR382LBS [biosample_summary="Homo sapiens NCI-H929"]
 HISTOGRAM FOR ATAC-seq_ENCSR382LBS [1.35, 33.3]
n
96,707,988
mean
6.5
sd
3.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 967079883.01% 157749
chr1 9547289 3.83% 15111
chr2 8548001 3.53% 14015
chr3 6645378 3.35% 11167
chr4 5826369 3.06% 9995
chr5 6634768 3.65% 11037
chr6 5977733 3.50% 9878
chr7 5017585 3.15% 8321
chr8 5599161 3.86% 9168
chr9 3804514 2.75% 6266
chr10 4132542 3.09% 6781
chr11 5510510 4.08% 8728
chr12 3919964 2.94% 6441
chr13 1579082 1.38% 2780
chr14 2813662 2.63% 4666
chr15 3026251 2.97% 4988
chr16 2559077 2.83% 3919
chr17 3098313 3.72% 4672
chr18 2594757 3.23% 4391
chr19 2366631 4.04% 3263
chr20 2477230 3.84% 3984
chr21 991679 2.12% 1620
chr22 1251011 2.46% 1860
chrX 2747615 1.76% 4625
chrY 38866 0.07% 73
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 157749 150 3254 613.05 493
global segment-length histogram

Files

Filename Size md5
ENCFF060HHC.bed.gz 6.24 MB 3dd52fe23774b15d0fe60f4cf180ff55
ENCFF060HHC.tabix.bed.gz 1.73 MB 3905b0a1cf68399d99e52193b1bbf0bd
ENCFF060HHC.tabix.bed.gz.tbi 596.86 KB 53e0b18c851f4e1d5ed424d3cce32060
genomic_resource.yaml 2.06 KB 81bf350af061deb8df84ccfa2863b379
statistics/