Resource
| Id | ATAC-seq/ENCSR373GMM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR373GMM [biosample_summary="Homo sapiens natural killer cell male adult (33 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (33 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN274MVO|/analyses/ENCAN274MVO/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF667KDJ|/files/ENCFF667KDJ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.70093. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF667KDJ|/files/ENCFF667KDJ/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR373GMM | float |
ATAC-seq_ENCSR373GMM |
ATAC-seq ENCSR373GMM [biosample_summary="Homo sapiens natural killer cell male adult (33 years)"]
|
 |
[1.3, 50.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 40393187 | 1.26% | 69922 |
| chr1 | 4088941 | 1.64% | 7023 |
| chr2 | 3031880 | 1.25% | 5407 |
| chr3 | 2338040 | 1.18% | 4093 |
| chr4 | 1433880 | 0.75% | 2513 |
| chr5 | 1896318 | 1.04% | 3332 |
| chr6 | 2339980 | 1.37% | 4028 |
| chr7 | 2019341 | 1.27% | 3540 |
| chr8 | 1520464 | 1.05% | 2667 |
| chr9 | 1607014 | 1.16% | 2815 |
| chr10 | 1845501 | 1.38% | 3237 |
| chr11 | 2007864 | 1.49% | 3439 |
| chr12 | 2005535 | 1.50% | 3435 |
| chr13 | 872679 | 0.76% | 1570 |
| chr14 | 1385121 | 1.29% | 2431 |
| chr15 | 1389933 | 1.36% | 2433 |
| chr16 | 1596213 | 1.77% | 2648 |
| chr17 | 2284724 | 2.74% | 3817 |
| chr18 | 730497 | 0.91% | 1314 |
| chr19 | 2148607 | 3.67% | 3531 |
| chr20 | 1136506 | 1.76% | 1997 |
| chr21 | 523504 | 1.12% | 908 |
| chr22 | 955638 | 1.88% | 1614 |
| chrX | 1175491 | 0.75% | 2031 |
| chrY | 59516 | 0.10% | 99 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 69922 | 150 | 2835 | 577.69 | 476 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF751CLW.bed.gz | 2.76 MB | a6fcb382ee8c1a49e8b92e6a3260d57d |
| ENCFF751CLW.tabix.bed.gz | 792.51 KB | 6be86b63156d057660dbd69ab4df8c99 |
| ENCFF751CLW.tabix.bed.gz.tbi | 302.08 KB | f764409647e92f5b48ba0c37499dc273 |
| genomic_resource.yaml | 2.57 KB | 32cd808c87b2a85f01cd14e9a501cc76 |
| statistics/ |