Resource
| Id | ATAC-seq/ENCSR345NVR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR345NVR [biosample_summary="Homo sapiens HG03460"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN216LGJ|/analyses/ENCAN216LGJ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR345NVR | float |
ATAC-seq_ENCSR345NVR |
ATAC-seq ENCSR345NVR [biosample_summary="Homo sapiens HG03460"]
|
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[1.55, 38.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 52068673 | 1.62% | 98954 |
| chr1 | 4694869 | 1.89% | 8801 |
| chr2 | 4505405 | 1.86% | 8757 |
| chr3 | 3630291 | 1.83% | 7134 |
| chr4 | 2972707 | 1.56% | 5930 |
| chr5 | 3131348 | 1.72% | 6145 |
| chr6 | 3457965 | 2.02% | 6644 |
| chr7 | 2919683 | 1.83% | 5623 |
| chr8 | 2581660 | 1.78% | 5056 |
| chr9 | 2109292 | 1.52% | 3992 |
| chr10 | 2553521 | 1.91% | 4847 |
| chr11 | 2491958 | 1.84% | 4661 |
| chr12 | 2583328 | 1.94% | 4873 |
| chr13 | 1417184 | 1.24% | 2752 |
| chr14 | 1640614 | 1.53% | 3075 |
| chr15 | 1536280 | 1.51% | 2881 |
| chr16 | 1499332 | 1.66% | 2624 |
| chr17 | 1780081 | 2.14% | 3175 |
| chr18 | 1200291 | 1.49% | 2397 |
| chr19 | 1398898 | 2.39% | 2198 |
| chr20 | 1109401 | 1.72% | 2112 |
| chr21 | 508101 | 1.09% | 922 |
| chr22 | 654682 | 1.29% | 1121 |
| chrX | 1578602 | 1.01% | 2987 |
| chrY | 113180 | 0.20% | 247 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 98954 | 150 | 3235 | 526.19 | 428 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF178ZJR.bed.gz | 3.76 MB | 215484f4539c6853917583ef0492f452 |
| ENCFF178ZJR.tabix.bed.gz | 1.08 MB | f2fa874005e7265fa1cb32ea7e452390 |
| ENCFF178ZJR.tabix.bed.gz.tbi | 438.79 KB | eadf616c8dc2e46af05b4b85df4bc910 |
| genomic_resource.yaml | 1.28 KB | 7d1a50ecb5b96c6aab92eddf41c53081 |
| statistics/ |
