Resource

Id ATAC-seq/ENCSR329XFZcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR329XFZ [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes"]
Description
Labels
  • accession: ENCSR329XFZ
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes
  • date_created: 2016-10-12T17:43:14.229565+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR329XFZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 30 minutes
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR329XFZ float

ATAC-seq_ENCSR329XFZ
ATAC-seq ENCSR329XFZ [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes"]
 HISTOGRAM FOR ATAC-seq_ENCSR329XFZ [1.53, 36.7]
n
45,116,488
mean
8.63
sd
4.42

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 451164881.40% 107729
chr1 4161172 1.67% 9960
chr2 3768785 1.56% 9107
chr3 2981897 1.50% 7161
chr4 2126016 1.12% 5115
chr5 2431864 1.34% 5908
chr6 2767373 1.62% 6623
chr7 2437650 1.53% 5821
chr8 2187360 1.51% 5306
chr9 1862498 1.35% 4503
chr10 2220174 1.66% 5356
chr11 2228634 1.65% 5341
chr12 2256809 1.69% 5420
chr13 1064723 0.93% 2566
chr14 1424660 1.33% 3363
chr15 1376767 1.35% 3316
chr16 1482767 1.64% 3377
chr17 1897742 2.28% 4412
chr18 991743 1.23% 2403
chr19 1604086 2.74% 3494
chr20 1192682 1.85% 2870
chr21 561380 1.20% 1303
chr22 736328 1.45% 1719
chrX 1352579 0.87% 3282
chrY 799 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 107729 150 2808 418.8 352
global segment-length histogram

Files

Filename Size md5
ENCFF350PMA.bed.gz 3.42 MB 7f962fb7207ae93d9c13b29bb1fb0d36
ENCFF350PMA.tabix.bed.gz 1.16 MB 1358885819bbf6dc520299ce39206dd3
ENCFF350PMA.tabix.bed.gz.tbi 436.25 KB 15bb1e81a2c63cb5837a7ea92bffc892
genomic_resource.yaml 1.59 KB edb42f679bbccbf4346b26a83a692a99
statistics/