Resource

Id ATAC-seq/ENCSR327DCGcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR327DCG [biosample_summary="Homo sapiens heart right ventricle tissue male adult (46 years)"]
Description
Labels
  • accession: ENCSR327DCG
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002080/
  • biosample_summary: Homo sapiens heart right ventricle tissue male adult (46 years)
  • date_created: 2019-05-25T01:39:41.117963+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR327DCG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (46 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR327DCG float

ATAC-seq_ENCSR327DCG
ATAC-seq ENCSR327DCG [biosample_summary="Homo sapiens heart right ventricle tissue male adult (46 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR327DCG [1.45, 25.2]
n
65,621,698
mean
4.22
sd
2.01

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 656216982.04% 122899
chr1 6162803 2.48% 11386
chr2 5165674 2.13% 9954
chr3 4261399 2.15% 8232
chr4 3142509 1.65% 6246
chr5 3660332 2.02% 7120
chr6 3814498 2.23% 7373
chr7 3419193 2.15% 6597
chr8 3026586 2.09% 5925
chr9 2872621 2.08% 5310
chr10 3223171 2.41% 6074
chr11 3440705 2.55% 6219
chr12 3138057 2.35% 5851
chr13 1766510 1.54% 3507
chr14 1970428 1.84% 3626
chr15 2233137 2.19% 4121
chr16 2242154 2.48% 3957
chr17 2916202 3.50% 4951
chr18 1548237 1.93% 3137
chr19 2354519 4.02% 3722
chr20 1723753 2.67% 3238
chr21 867649 1.86% 1638
chr22 1412271 2.78% 2491
chrX 1118029 0.72% 1932
chrY 141261 0.25% 292
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 122899 150 2846 533.95 421
global segment-length histogram

Files

Filename Size md5
ENCFF893PDK.bed.gz 4.63 MB 7aef0aef042e3f2d0f80783f027372ff
ENCFF893PDK.tabix.bed.gz 1.34 MB 924e6148aac626ba4c8d3cf337f6c5a1
ENCFF893PDK.tabix.bed.gz.tbi 472.98 KB d9c0cf99daaa83eb1c8e15f1714e17b3
genomic_resource.yaml 2.2 KB 6b785abdc6b2ca7d51cac5d0eb5f4bb7
statistics/