Resource

Id ATAC-seq/ENCSR326ESMcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR326ESM [biosample_summary="Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours"]
Description
Labels
  • accession: ENCSR326ESM
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000667/
  • biosample_summary: Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours
  • date_created: 2021-09-23T04:34:04.247440+00:00
  • date_released: 2021-10-13
  • doi: 10.17989/ENCSR326ESM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR326ESM float

ATAC-seq_ENCSR326ESM
ATAC-seq ENCSR326ESM [biosample_summary="Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR326ESM [1.53, 36.2]
n
46,595,635
mean
7.45
sd
3.98

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 465956351.45% 96646
chr1 4645018 1.87% 9448
chr2 3787857 1.56% 8100
chr3 2949852 1.49% 6251
chr4 1841451 0.97% 3948
chr5 2326915 1.28% 4976
chr6 2872686 1.68% 6042
chr7 2290416 1.44% 4815
chr8 2004700 1.38% 4255
chr9 1870534 1.35% 3872
chr10 2222566 1.66% 4730
chr11 2273698 1.68% 4649
chr12 2311537 1.73% 4709
chr13 1122568 0.98% 2429
chr14 1552427 1.45% 3218
chr15 1563512 1.53% 3273
chr16 1669045 1.85% 3313
chr17 2259330 2.71% 4473
chr18 862168 1.07% 1888
chr19 1999123 3.41% 3717
chr20 1242667 1.93% 2613
chr21 620926 1.33% 1289
chr22 988456 1.95% 1997
chrX 1256458 0.81% 2499
chrY 61725 0.11% 142
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96646 150 2788 482.13 391
global segment-length histogram

Files

Filename Size md5
ENCFF354VIQ.bed.gz 3.42 MB ec3f5eb13f8cab09365dd8c192528876
ENCFF354VIQ.tabix.bed.gz 1.05 MB 6f92e33a09179eb85f7b31144b85f284
ENCFF354VIQ.tabix.bed.gz.tbi 406.36 KB 7767c700d23cbcee21ed8bf52f726756
genomic_resource.yaml 2.23 KB 4ed98ccac7d0255ab23ae4ed509652e7
statistics/