Resource
| Id | ATAC-seq/ENCSR310RJN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR310RJN [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN927JTE|/analyses/ENCAN927JTE/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN927JTE|/analyses/ENCAN927JTE/} has in progress subobject document {ec82a6c8-6965-4f26-986b-36e1d211cfed|/documents/ec82a6c8-6965-4f26-986b-36e1d211cfed/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF804KIW|/files/ENCFF804KIW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.81495. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF804KIW|/files/ENCFF804KIW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR310RJN | float |
ATAC-seq_ENCSR310RJN |
ATAC-seq ENCSR310RJN [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)"]
|
 |
[1.24, 36.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 68236903 | 2.12% | 134902 |
| chr1 | 6637217 | 2.67% | 12914 |
| chr2 | 5391358 | 2.23% | 10849 |
| chr3 | 4387939 | 2.21% | 8901 |
| chr4 | 3012174 | 1.58% | 6246 |
| chr5 | 3703613 | 2.04% | 7552 |
| chr6 | 3872642 | 2.27% | 7909 |
| chr7 | 3480629 | 2.18% | 7007 |
| chr8 | 3019464 | 2.08% | 6198 |
| chr9 | 2912591 | 2.10% | 5671 |
| chr10 | 3440000 | 2.57% | 6973 |
| chr11 | 3534622 | 2.62% | 6754 |
| chr12 | 3205957 | 2.41% | 6283 |
| chr13 | 1688103 | 1.48% | 3497 |
| chr14 | 2077949 | 1.94% | 4090 |
| chr15 | 2444894 | 2.40% | 4753 |
| chr16 | 2449086 | 2.71% | 4638 |
| chr17 | 3224347 | 3.87% | 5946 |
| chr18 | 1535319 | 1.91% | 3226 |
| chr19 | 2486606 | 4.24% | 4257 |
| chr20 | 1843503 | 2.86% | 3688 |
| chr21 | 849654 | 1.82% | 1686 |
| chr22 | 1549648 | 3.05% | 2956 |
| chrX | 1401573 | 0.90% | 2702 |
| chrY | 88015 | 0.15% | 206 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 134902 | 150 | 3229 | 505.83 | 407 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF568NPG.bed.gz | 5.03 MB | 5c032194fa4a1316a47ab9cb0e0ffc31 |
| ENCFF568NPG.tabix.bed.gz | 1.47 MB | 84edc6ec9830594c31f22e641296a1bc |
| ENCFF568NPG.tabix.bed.gz.tbi | 463.87 KB | 598c7aebf5d2be56a21e6f97f83f5d6b |
| genomic_resource.yaml | 2.8 KB | e8508f14647fdabfbc21d8659597d553 |
| statistics/ |