Resource

Id ATAC-seq/ENCSR295TFYcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR295TFY [biosample_summary="Homo sapiens aorta tissue female child (16 years)"]
Description
Labels
  • accession: ENCSR295TFY
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000947/
  • biosample_summary: Homo sapiens aorta tissue female child (16 years)
  • date_created: 2019-05-25T06:45:54.455607+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR295TFY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR295TFY float

ATAC-seq_ENCSR295TFY
ATAC-seq ENCSR295TFY [biosample_summary="Homo sapiens aorta tissue female child (16 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR295TFY [1.38, 20.8]
n
58,743,486
mean
3.4
sd
1.61

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 587434861.83% 99483
chr1 5464854 2.20% 9032
chr2 4681450 1.93% 8122
chr3 3725247 1.88% 6457
chr4 2662009 1.40% 4665
chr5 3133624 1.73% 5446
chr6 3304614 1.93% 5681
chr7 3028119 1.90% 5254
chr8 2497600 1.72% 4362
chr9 2667571 1.93% 4496
chr10 2955746 2.21% 5134
chr11 2973516 2.20% 4926
chr12 2832311 2.13% 4783
chr13 1447725 1.27% 2544
chr14 1833585 1.71% 3073
chr15 2021225 1.98% 3367
chr16 2053922 2.27% 3327
chr17 2711697 3.26% 4305
chr18 1229612 1.53% 2232
chr19 2330028 3.97% 3528
chr20 1555347 2.41% 2682
chr21 813969 1.74% 1376
chr22 1241142 2.44% 2049
chrX 1576259 1.01% 2633
chrY 2314 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 99483 150 3658 590.49 473
global segment-length histogram

Files

Filename Size md5
ENCFF116BZN.bed.gz 3.92 MB afac20c1162376a3f60de44e5d9193c3
ENCFF116BZN.tabix.bed.gz 1.09 MB b6431537546523038886d639288abcac
ENCFF116BZN.tabix.bed.gz.tbi 437.08 KB 6e39717e76eb48b5f0a127fe4e90934e
genomic_resource.yaml 2.68 KB 100b12db443089911a44e381e721285e
statistics/