Resource
| Id | ATAC-seq/ENCSR286STX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR286STX [biosample_summary="Homo sapiens heart left ventricle tissue male adult (66 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (66 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN951VGV|/analyses/ENCAN951VGV/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN951VGV|/analyses/ENCAN951VGV/} has in progress subobject document {47147ba9-f204-4125-a3d0-9851b64412f4|/documents/47147ba9-f204-4125-a3d0-9851b64412f4/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF440WVI|/files/ENCFF440WVI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.79967. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF440WVI|/files/ENCFF440WVI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR286STX | float |
ATAC-seq_ENCSR286STX |
ATAC-seq ENCSR286STX [biosample_summary="Homo sapiens heart left ventricle tissue male adult (66 years)"]
|
 |
[1.29, 42.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 78713132 | 2.45% | 160555 |
| chr1 | 7622503 | 3.06% | 15318 |
| chr2 | 6325168 | 2.61% | 13143 |
| chr3 | 5145278 | 2.59% | 10741 |
| chr4 | 3436235 | 1.81% | 7269 |
| chr5 | 4273759 | 2.35% | 8948 |
| chr6 | 4522979 | 2.65% | 9451 |
| chr7 | 3957234 | 2.48% | 8273 |
| chr8 | 3500249 | 2.41% | 7273 |
| chr9 | 3384150 | 2.45% | 6821 |
| chr10 | 4041889 | 3.02% | 8342 |
| chr11 | 4046296 | 3.00% | 8056 |
| chr12 | 3757414 | 2.82% | 7607 |
| chr13 | 1966442 | 1.72% | 4169 |
| chr14 | 2394172 | 2.24% | 4866 |
| chr15 | 2768125 | 2.71% | 5609 |
| chr16 | 2791787 | 3.09% | 5479 |
| chr17 | 3643695 | 4.38% | 7055 |
| chr18 | 1757784 | 2.19% | 3780 |
| chr19 | 2732136 | 4.66% | 4928 |
| chr20 | 2147047 | 3.33% | 4392 |
| chr21 | 1021504 | 2.19% | 2082 |
| chr22 | 1744357 | 3.43% | 3436 |
| chrX | 1640782 | 1.05% | 3310 |
| chrY | 92147 | 0.16% | 207 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 160555 | 150 | 3449 | 490.26 | 398 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF135EYC.bed.gz | 5.69 MB | 9a22b10d03fe2e8b68c9eb806893fb80 |
| ENCFF135EYC.tabix.bed.gz | 1.74 MB | b0ee407c5971600e0ac41351b9109a67 |
| ENCFF135EYC.tabix.bed.gz.tbi | 496.2 KB | a7e02a25024eff621c7c7c24216c976e |
| genomic_resource.yaml | 2.8 KB | 0298ce62e5f9c4492b01069c4492eadd |
| statistics/ |