type: position_score
table:
  filename: ENCFF861UUN.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: ATAC-seq_ENCSR278JWM
  column_index: 3
  type: float
  desc: 'ATAC-seq ENCSR278JWM [biosample_summary="Homo sapiens HG03558"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ATAC-seq ENCSR278JWM [biosample_summary="Homo sapiens HG03558"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1\n\n**summary**:\
    \ \n\n**output\\_type**: pseudoreplicated peaks\n\n**audit\\_error**: Alignment\
    \ file {ENCFF842JIO|/files/ENCFF842JIO/} processed by ATAC-seq ENCODE4 v1.9.1\
    \ GRCh38 pipeline has 12353607 usable fragments. According to ENCODE4 standards,\
    \ ATAC-seq assays processed by the uniform processing pipeline should have > 25\
    \ million usable fragments. 20-25 million is acceptable and < 15 million is not\
    \ compliant.\n\n**audit\\_internal\\_action**: Released analysis {ENCAN200ZNV|/analyses/ENCAN200ZNV/}\
    \ has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/}\n\
    \n**audit\\_warning**: According to ENCODE4 standards, ATAC-seq assays processed\
    \ by the uniform processing pipeline should have either >150k reproducible peaks\
    \ in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k\
    \ or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is\
    \ not compliant. File(s) {ENCFF861UUN|/files/ENCFF861UUN/} (overlap peaks) and\
    \ {ENCFF305ZQQ|/files/ENCFF305ZQQ/} (IDR thresholded peaks) processed by ATAC-seq\
    \ ENCODE4 v1.9.1 GRCh38 pipeline have 114143 and 52082 peaks."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR278JWM
    status: released
    assay_term_name: ATAC-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HG03558
    replication_type: unreplicated
    biosample_ontology: /biosample-types/cell_line_EFO_0010887/
    perturbed: false
    doi: 10.17989/ENCSR278JWM
    date_created: '2020-11-24T22:02:43.137703+00:00'
    date_released: '2021-02-11'
    submitter_comment: ''