Resource
| Id | ATAC-seq/ENCSR251POP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR251POP [biosample_summary="Homo sapiens pancreas tissue female adult (61 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN366VVQ|/analyses/ENCAN366VVQ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF446FCI|/files/ENCFF446FCI/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.868172. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF446FCI|/files/ENCFF446FCI/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR251POP | float |
ATAC-seq_ENCSR251POP |
ATAC-seq ENCSR251POP [biosample_summary="Homo sapiens pancreas tissue female adult (61 years)"]
|
 |
[1.22, 41.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 92097897 | 2.86% | 158561 |
| chr1 | 8890194 | 3.57% | 15045 |
| chr2 | 7285162 | 3.01% | 12808 |
| chr3 | 5680929 | 2.86% | 10226 |
| chr4 | 4160529 | 2.19% | 7643 |
| chr5 | 4743804 | 2.61% | 8432 |
| chr6 | 5249034 | 3.07% | 9192 |
| chr7 | 4951372 | 3.11% | 8581 |
| chr8 | 3955810 | 2.73% | 7030 |
| chr9 | 3930401 | 2.84% | 6669 |
| chr10 | 4715704 | 3.52% | 8217 |
| chr11 | 4686987 | 3.47% | 7832 |
| chr12 | 4347615 | 3.26% | 7494 |
| chr13 | 2331616 | 2.04% | 4193 |
| chr14 | 3076129 | 2.87% | 5255 |
| chr15 | 3186350 | 3.12% | 5410 |
| chr16 | 3334434 | 3.69% | 5442 |
| chr17 | 4268180 | 5.13% | 6853 |
| chr18 | 1934720 | 2.41% | 3529 |
| chr19 | 3296911 | 5.62% | 4935 |
| chr20 | 2492873 | 3.87% | 4331 |
| chr21 | 1236335 | 2.65% | 2085 |
| chr22 | 1999406 | 3.93% | 3218 |
| chrX | 2341638 | 1.50% | 4134 |
| chrY | 1764 | <0.01% | 7 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 158561 | 150 | 3977 | 580.84 | 455 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF678PAI.bed.gz | 6.22 MB | 20bba6d388cefb7965b206c51b826354 |
| ENCFF678PAI.tabix.bed.gz | 1.73 MB | 58a2a6064641d7102ce0a1c0cf05a39a |
| ENCFF678PAI.tabix.bed.gz.tbi | 525.26 KB | 7f632aa14bc77c0583406d42fb961e09 |
| genomic_resource.yaml | 2.56 KB | c6930b053d96c5446cfa83fbb4270aeb |
| statistics/ |