Resource
| Id | ATAC-seq/ENCSR249FXU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR249FXU [biosample_summary="Homo sapiens HG03045"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN501VDJ|/analyses/ENCAN501VDJ/} has in progress subobject document {e3d4ed9b-0dd0-4237-96f6-1b396863f09a|/documents/e3d4ed9b-0dd0-4237-96f6-1b396863f09a/} audit_internal_action: Released analysis {ENCAN501VDJ|/analyses/ENCAN501VDJ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF216MFD|/files/ENCFF216MFD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.786952. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF216MFD|/files/ENCFF216MFD/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR249FXU | float |
ATAC-seq_ENCSR249FXU |
ATAC-seq ENCSR249FXU [biosample_summary="Homo sapiens HG03045"]
|
 |
[1.43, 29.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45258045 | 1.41% | 80954 |
| chr1 | 4207952 | 1.69% | 7375 |
| chr2 | 3903329 | 1.61% | 7211 |
| chr3 | 3193678 | 1.61% | 5935 |
| chr4 | 2531012 | 1.33% | 4833 |
| chr5 | 2710216 | 1.49% | 5014 |
| chr6 | 3040202 | 1.78% | 5445 |
| chr7 | 2483400 | 1.56% | 4491 |
| chr8 | 2182900 | 1.50% | 4060 |
| chr9 | 1790514 | 1.29% | 3229 |
| chr10 | 2131527 | 1.59% | 3871 |
| chr11 | 2203394 | 1.63% | 3904 |
| chr12 | 2239579 | 1.68% | 3981 |
| chr13 | 1203968 | 1.05% | 2226 |
| chr14 | 1388551 | 1.30% | 2422 |
| chr15 | 1280051 | 1.26% | 2246 |
| chr16 | 1330965 | 1.47% | 2194 |
| chr17 | 1656346 | 1.99% | 2680 |
| chr18 | 973794 | 1.21% | 1851 |
| chr19 | 1382419 | 2.36% | 2077 |
| chr20 | 958286 | 1.49% | 1689 |
| chr21 | 475205 | 1.02% | 804 |
| chr22 | 653704 | 1.29% | 1052 |
| chrX | 1261511 | 0.81% | 2225 |
| chrY | 75542 | 0.13% | 139 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 80954 | 150 | 3556 | 559.06 | 454 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF935BZV.bed.gz | 3.19 MB | a93770cd716148a9deb1461eb877cfc3 |
| ENCFF935BZV.tabix.bed.gz | 907.12 KB | a0812bb2a4bf6b8d4778e4fc185d933a |
| ENCFF935BZV.tabix.bed.gz.tbi | 385.33 KB | 4433c36ca30c1ef64dbd649cface3a4e |
| genomic_resource.yaml | 2.71 KB | eb4c5e9461715673551e5a70d75d815e |
| statistics/ |