Resource
| Id | ATAC-seq/ENCSR241OBO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR241OBO [biosample_summary="Homo sapiens adrenal gland tissue female adult (59 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN675IIL|/analyses/ENCAN675IIL/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN675IIL|/analyses/ENCAN675IIL/} has in progress subobject document {e4a900c7-0c08-466f-8d51-110cd903d432|/documents/e4a900c7-0c08-466f-8d51-110cd903d432/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF757CCU|/files/ENCFF757CCU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.857329. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF757CCU|/files/ENCFF757CCU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR241OBO | float |
ATAC-seq_ENCSR241OBO |
ATAC-seq ENCSR241OBO [biosample_summary="Homo sapiens adrenal gland tissue female adult (59 years)"]
|
 |
[1.25, 42] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 103538490 | 3.22% | 185853 |
| chr1 | 10003076 | 4.02% | 17969 |
| chr2 | 8193850 | 3.38% | 15012 |
| chr3 | 6682193 | 3.37% | 12401 |
| chr4 | 4392469 | 2.31% | 8256 |
| chr5 | 5373730 | 2.96% | 9988 |
| chr6 | 5680882 | 3.33% | 10288 |
| chr7 | 5379058 | 3.38% | 9722 |
| chr8 | 4535329 | 3.12% | 8271 |
| chr9 | 4601225 | 3.32% | 8234 |
| chr10 | 5056346 | 3.78% | 9227 |
| chr11 | 5324136 | 3.94% | 9457 |
| chr12 | 5016951 | 3.76% | 8988 |
| chr13 | 2594142 | 2.27% | 4687 |
| chr14 | 3323149 | 3.10% | 5958 |
| chr15 | 3444600 | 3.38% | 6145 |
| chr16 | 3595822 | 3.98% | 6080 |
| chr17 | 4922406 | 5.91% | 8370 |
| chr18 | 2193865 | 2.73% | 4043 |
| chr19 | 3787905 | 6.46% | 6070 |
| chr20 | 2902128 | 4.50% | 5237 |
| chr21 | 1306702 | 2.80% | 2235 |
| chr22 | 2293087 | 4.51% | 3889 |
| chrX | 2934366 | 1.88% | 5321 |
| chrY | 1073 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 185853 | 150 | 3630 | 557.1 | 431 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF541GYF.bed.gz | 7.0 MB | b725daa904a45e640645eae1c39b73bf |
| ENCFF541GYF.tabix.bed.gz | 2.03 MB | 0afb35cc8d5919ba825ebb7ab238b856 |
| ENCFF541GYF.tabix.bed.gz.tbi | 539.79 KB | a4588a71bb1902acc8bfcc2281551563 |
| genomic_resource.yaml | 2.79 KB | 7f73bf11fc9d83838de666753a34982a |
| statistics/ |